Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LC603172_RS14860 Genome accession   NZ_AP024565
Coordinates   2973039..2974667 (+) Length   542 a.a.
NCBI ID   WP_061430281.1    Uniprot ID   -
Organism   Microcystis aeruginosa strain NIES-88     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2968039..2979667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC603172_RS14830 - 2969234..2969506 (-) 273 WP_221275337.1 hypothetical protein -
  LC603172_RS14835 (MAN88_28760) - 2969845..2970741 (-) 897 WP_061430277.1 AEC family transporter -
  LC603172_RS14840 (MAN88_28770) - 2970791..2971390 (-) 600 WP_061430278.1 Uma2 family endonuclease -
  LC603172_RS14845 - 2971370..2971567 (+) 198 WP_192845951.1 hypothetical protein -
  LC603172_RS14850 (MAN88_28790) - 2971552..2971947 (-) 396 WP_061430279.1 nucleotidyltransferase family protein -
  LC603172_RS14855 (MAN88_28800) - 2971907..2972767 (-) 861 WP_061430280.1 formylglycine-generating enzyme family protein -
  LC603172_RS14860 (MAN88_28810) comA 2973039..2974667 (+) 1629 WP_061430281.1 phospholipase D-like domain-containing protein Machinery gene
  LC603172_RS14865 (MAN88_28820) - 2974961..2975272 (-) 312 WP_061430283.1 MgPME-cyclase complex family protein -
  LC603172_RS14870 (MAN88_28830) - 2975340..2976062 (-) 723 WP_199319125.1 pyridoxine 5'-phosphate synthase -
  LC603172_RS14875 (MAN88_28840) - 2976122..2976466 (-) 345 WP_061430285.1 YbaB/EbfC family nucleoid-associated protein -
  LC603172_RS14880 (MAN88_28850) - 2976731..2977927 (+) 1197 WP_311737001.1 DUF4377 domain-containing protein -
  LC603172_RS14885 (MAN88_28860) - 2978231..2979007 (-) 777 WP_061430286.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 61199.66 Da        Isoelectric Point: 9.4565

>NTDB_id=86036 LC603172_RS14860 WP_061430281.1 2973039..2974667(+) (comA) [Microcystis aeruginosa strain NIES-88]
MQLRLELVKKIWTMGQLVFLLGTVFLLGGCHSLNVIQNRPQPLPQDQYIQVYFNYNQAQGSNYTDPYRQINRPGDNLEQV
IIDNINSAKSSINLAVQELRLPAIAQALATRQQQGIKVRVILENIYNKPINSLAKNQEQSSDREQERYQNLFDLVDINRD
GKLSAEEIAQRDAITILKKAGIPIIDDRADRSKGSSLMHHKFMVIDNYTTLISSANYTLSDIHGDFSNTQTVGNANHLLV
INNPPLARVFQREFNLMWGREDRPKFGLDKPQRKPQKIPIGNSSLTVKFSPDSTAYPWPITSNGLIGETLNKAEKSVNLA
LFVFTEQPLANILAQRHQKGIEIKALIDPSFAFRYYSEGLDLLGVALSNKCRYEPDNQPWQNPINTLGVPHLARGDKLHH
KFGLIDDKIVITGSHNWSRAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRKNCPQSVTIKSD
RLINLNTATKEELDSLPSISGKLAEKIIAARQQKPFTSLEDLDRVSGIGQGKISKLQGKVSW

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=86036 LC603172_RS14860 WP_061430281.1 2973039..2974667(+) (comA) [Microcystis aeruginosa strain NIES-88]
ATGCAATTAAGACTTGAATTGGTTAAAAAAATTTGGACTATGGGACAGTTAGTATTTTTGTTAGGAACAGTTTTTCTTTT
GGGTGGCTGTCATTCTCTGAATGTTATCCAAAATCGTCCCCAACCCTTGCCCCAAGATCAATATATTCAAGTCTATTTTA
ATTATAATCAAGCCCAGGGTTCAAATTATACCGATCCCTATCGCCAAATTAATCGCCCGGGGGATAATTTAGAACAGGTT
ATTATTGATAATATCAACTCGGCAAAAAGTTCGATCAATCTAGCAGTGCAAGAGTTACGTTTACCCGCCATCGCTCAAGC
TTTAGCTACTCGTCAGCAACAGGGAATTAAAGTTAGGGTTATTCTCGAAAACATTTACAATAAACCTATTAATAGTTTAG
CCAAAAACCAAGAACAATCAAGCGATCGAGAACAGGAACGTTATCAAAACCTTTTTGATTTAGTTGACATAAATCGCGAT
GGTAAATTAAGTGCGGAGGAAATCGCCCAAAGAGATGCAATTACTATCCTCAAAAAAGCGGGTATTCCCATAATTGATGA
TAGGGCAGATCGCTCAAAAGGTAGCAGTTTAATGCACCATAAATTCATGGTTATTGATAATTACACTACTTTAATCAGTT
CAGCTAACTATACCTTAAGTGATATTCATGGAGACTTTTCTAATACCCAAACTGTCGGGAATGCCAATCACTTATTAGTC
ATTAATAATCCCCCACTAGCTAGAGTTTTTCAAAGAGAATTTAATCTGATGTGGGGAAGGGAAGATCGGCCTAAATTTGG
GTTAGATAAACCCCAGAGAAAACCGCAAAAAATTCCTATCGGTAATAGTAGTCTGACGGTCAAATTTTCCCCCGATTCTA
CCGCTTATCCTTGGCCAATTACTAGCAATGGTCTCATTGGTGAAACTTTAAATAAAGCTGAAAAATCCGTGAATTTAGCC
CTGTTTGTCTTTACGGAACAGCCTTTAGCTAATATTCTCGCTCAACGACATCAAAAAGGGATAGAAATTAAAGCTTTAAT
TGATCCTAGTTTTGCCTTCCGATACTATAGCGAAGGATTAGATTTATTAGGAGTTGCTCTCAGTAATAAATGTCGTTATG
AACCAGATAATCAGCCTTGGCAAAACCCAATTAATACCCTAGGAGTTCCCCATCTAGCCCGGGGAGATAAATTACACCAT
AAATTCGGTTTAATCGATGATAAAATTGTGATTACTGGTTCTCATAATTGGTCAAGAGCCGCTAACCATCAAAACGATGA
AGCTTTAGTTATTATCGATAATCCCACCGTTGCCGCTCATTTCGATCGAGAATTTCAATATCTTTACCGTACCGCTAAAT
TAGGACTGCCGGAAACTATTAAAAATCGGATCGAACAAGATAGAAAAAACTGCCCCCAATCTGTAACAATTAAAAGCGAT
CGCTTAATTAATTTAAACACCGCCACCAAAGAAGAATTAGATAGTTTACCCAGTATCAGTGGCAAATTAGCCGAAAAAAT
TATCGCTGCCAGGCAACAAAAACCCTTTACTTCCCTAGAAGATTTGGATCGAGTATCGGGAATCGGTCAGGGAAAAATTA
GCAAGCTCCAAGGCAAAGTCAGCTGGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(481-540)

PLD-like domain (PLDc_2)

(81-258)

PLD-like domain (PLDc_2)

(308-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

51.493

98.893

0.509

Multiple sequence alignment