Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   WCU06_RS00360 Genome accession   NZ_CP147551
Coordinates   74211..74879 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain GN04979     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69211..79879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU06_RS00330 (WCU06_00330) yicC 69230..70093 (-) 864 WP_000621332.1 YicC/YloC family endoribonuclease -
  WCU06_RS00335 (WCU06_00335) rph 70220..70936 (+) 717 WP_001247093.1 ribonuclease PH -
  WCU06_RS00340 (WCU06_00340) pyrE 71002..71643 (+) 642 WP_000806174.1 orotate phosphoribosyltransferase -
  WCU06_RS00345 (WCU06_00345) slmA 71680..72276 (-) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  WCU06_RS00350 (WCU06_00350) dut 72383..72841 (-) 459 WP_000976066.1 dUTP diphosphatase -
  WCU06_RS00355 (WCU06_00355) coaBC 72819..74039 (-) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  WCU06_RS00360 (WCU06_00360) radC 74211..74879 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  WCU06_RS00365 (WCU06_00365) rpmB 75096..75332 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  WCU06_RS00370 (WCU06_00370) rpmG 75353..75520 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  WCU06_RS00375 (WCU06_00375) mutM 75618..76427 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  WCU06_RS00380 (WCU06_00380) coaD 76466..76945 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  WCU06_RS00385 (WCU06_00385) waaA 76953..78230 (-) 1278 WP_000891546.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  WCU06_RS00390 (WCU06_00390) rfaQ 78643..79701 (+) 1059 WP_000360396.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=860299 WCU06_RS00360 WP_001297375.1 74211..74879(+) (radC) [Escherichia coli strain GN04979]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=860299 WCU06_RS00360 WP_001297375.1 74211..74879(+) (radC) [Escherichia coli strain GN04979]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496