Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   LC603172_RS06330 Genome accession   NZ_AP024565
Coordinates   1294577..1297588 (+) Length   1003 a.a.
NCBI ID   WP_061433063.1    Uniprot ID   -
Organism   Microcystis aeruginosa strain NIES-88     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289577..1302588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC603172_RS06295 (MAN88_12160) - 1289618..1290604 (+) 987 WP_221275333.1 IS30-like element ISMae39 family transposase -
  LC603172_RS06300 (MAN88_12170) - 1290578..1290871 (-) 294 WP_260324526.1 hypothetical protein -
  LC603172_RS29130 - 1291047..1291676 (+) 630 Protein_1270 FkbM family methyltransferase -
  LC603172_RS06310 (MAN88_12200) - 1291905..1292159 (-) 255 WP_061433066.1 hypothetical protein -
  LC603172_RS06315 (MAN88_12210) - 1292172..1293113 (-) 942 WP_061433065.1 homogentisate phytyltransferase -
  LC603172_RS06325 (MAN88_12220) - 1293808..1294470 (-) 663 WP_061433064.1 class I SAM-dependent methyltransferase -
  LC603172_RS06330 (MAN88_12230) pilL-C 1294577..1297588 (+) 3012 WP_061433063.1 hybrid sensor histidine kinase/response regulator Machinery gene
  LC603172_RS06335 (MAN88_12240) - 1297603..1298352 (-) 750 WP_061433062.1 class I SAM-dependent methyltransferase -
  LC603172_RS06340 (MAN88_12250) - 1298433..1298924 (-) 492 WP_061433061.1 hypothetical protein -
  LC603172_RS06345 (MAN88_12260) uvrB 1299116..1301119 (+) 2004 WP_061433060.1 excinuclease ABC subunit UvrB -
  LC603172_RS06350 (MAN88_12270) - 1301124..1302071 (+) 948 WP_061433102.1 hypothetical protein -

Sequence

Protein


Download         Length: 1003 a.a.        Molecular weight: 110038.16 Da        Isoelectric Point: 4.3958

>NTDB_id=86027 LC603172_RS06330 WP_061433063.1 1294577..1297588(+) (pilL-C) [Microcystis aeruginosa strain NIES-88]
MMKPDSDHLFNEDLEQLLESLEDKDADGDEALEELFGDSINWEESATNDLYSTPGPAPKLEPEDGDDLESLLLENAVVLD
SEAIIAIGNPDFYDSLEDLEAFLEKPTPPAQPPLPDIFESLEAFLWESPAVDPVAAVEPLKGLESLEIAPESLLEDEFKD
LEKLLEETNQVMAANPAASVSPPVGSKNLRPLVSKAFEQTMRVPIKQLDNLSNLIGELVVKRNRLEEEQDRLRLFLDNLL
TCVQHLGDVGSRMQDLYERSLLEGALLASRNSGGAIGYGRVQGENQGDSAMAGELDALEIDRFTDFHLLSQEMIELIVRV
RESASDLQFVVDETDQVTRSLRQATTQLQEGMTKSRMVPFSQAADRLPRAIRDISLKLDKQAKLKVEGGDVLIDKMILEN
LNSPMTHLVNNAITHGIESPQERMAKGKPALGTISVRAFLQGNQTVITVGDDGAGIDADQVKRKAIEKGLIGDQETEHLS
PQEVYKLLFHPGFSTKDQADDFAGRGVGLDVVQTSLIDVRGTVTIDSVLGKGSTFTIRLPLTLSICKALCCVSNHARIGF
SMDGVEDMKDFRSSDIQMDREGRRCVFWQNTLLPFQPLSELLSYNRQLSRGSFYTGKQEQDSFSIVILRGGNNLLAVQVD
QVIGELEIVIKQIEGPIPKTAGIAGATVLGDGTVMPIGDVLELIDIARGRLRTDNGGLWRQPAPPVGVETRQKSGAMVLI
VDDSITVRGLLSLSFSKAGYRVEQARDGQEAWEKLRGGLPCDIVFCDIEMPRMNGLELLYNLQKDPRLASIPVALLTSRG
AERHRQVAATLGASGYFTKPYTERDLLSAAERMIAGEVLLANSIKATRNQPLSPDATIIDSNPANFFAQSTPRVLIVDDS
VTAREMLAISLVKAGYRIEEARDGLEAWEKLRAGLACDLILCDLEMPRLNGLELLSRLQEDEQLQGIPVAMITSRGSQKM
QHLAAAKGAKGYFVKPYIEDVLLSAAQRLIAGEVLIQKESPAD

Nucleotide


Download         Length: 3012 bp        

>NTDB_id=86027 LC603172_RS06330 WP_061433063.1 1294577..1297588(+) (pilL-C) [Microcystis aeruginosa strain NIES-88]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAGGATCTCGAACAGCTGTTAGAGAGTTTAGAAGACAAAGACGCCGA
CGGTGACGAGGCTCTAGAGGAACTGTTTGGCGATAGTATCAATTGGGAAGAATCCGCCACTAATGATCTTTATTCTACCC
CCGGACCGGCTCCCAAGTTAGAACCGGAAGATGGGGATGATCTCGAATCTCTGCTGCTAGAAAACGCGGTGGTCCTGGAC
TCAGAAGCAATTATAGCCATCGGCAACCCCGATTTTTACGACAGCCTCGAAGACTTAGAAGCTTTTCTGGAAAAACCCAC
GCCACCGGCGCAACCGCCACTACCAGACATCTTTGAATCCCTAGAGGCCTTCCTCTGGGAATCCCCAGCAGTGGACCCGG
TGGCCGCGGTGGAACCTCTGAAAGGGTTAGAATCACTGGAAATTGCCCCAGAAAGCCTCCTAGAGGATGAATTCAAGGAT
TTAGAAAAACTCCTCGAAGAAACCAATCAGGTGATGGCAGCAAATCCGGCGGCCAGTGTCAGTCCGCCAGTCGGGTCAAA
AAACCTGCGTCCCCTTGTCAGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAACAATTGGATAACCTCAGCAATC
TGATCGGGGAACTGGTGGTTAAACGCAATCGCCTTGAAGAGGAACAGGATCGCCTGCGTCTCTTTTTAGATAATTTGCTA
ACCTGCGTCCAACATCTGGGTGATGTGGGCAGTCGGATGCAGGATCTCTATGAAAGAAGCCTCCTAGAAGGGGCTTTACT
GGCTAGTCGCAATTCCGGTGGTGCCATCGGTTACGGTAGAGTTCAGGGAGAAAATCAGGGGGATTCGGCCATGGCCGGCG
AACTAGATGCCCTAGAGATCGACCGTTTTACCGATTTCCATTTATTATCCCAAGAGATGATCGAATTGATCGTACGAGTG
CGAGAATCGGCCTCTGATCTTCAATTTGTCGTCGATGAAACCGATCAGGTGACGCGCAGTCTGCGACAGGCCACCACCCA
ACTACAGGAAGGGATGACCAAATCGCGCATGGTTCCCTTTAGTCAAGCCGCCGATCGCCTACCCCGGGCAATTCGCGATA
TTTCCCTGAAACTCGATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCATCGATAAGATGATCCTCGAAAAT
CTCAATAGTCCCATGACCCATCTGGTCAACAATGCGATCACCCACGGCATTGAATCACCCCAAGAACGCATGGCCAAAGG
GAAACCTGCCCTCGGTACCATCTCTGTCCGGGCATTCCTACAGGGGAATCAAACCGTGATCACCGTTGGTGATGATGGGG
CCGGTATTGATGCTGATCAGGTGAAACGCAAGGCGATCGAAAAAGGCCTGATCGGCGATCAGGAAACTGAACACCTCAGT
CCCCAAGAAGTCTATAAACTCCTCTTTCACCCCGGTTTTAGTACCAAAGATCAGGCCGATGATTTTGCTGGTCGTGGGGT
GGGTTTAGATGTGGTGCAGACCAGTTTAATCGATGTGCGCGGGACCGTTACTATTGACTCGGTACTGGGCAAAGGAAGCA
CTTTTACCATCCGTTTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTGTTGTGTTAGTAATCATGCGCGCATCGGGTTC
TCCATGGACGGAGTGGAAGATATGAAGGATTTCCGGTCCAGCGATATCCAAATGGATAGGGAGGGACGGCGCTGCGTTTT
CTGGCAAAATACTTTACTACCCTTCCAACCCTTGAGCGAATTGCTTTCCTACAATCGGCAACTAAGTCGCGGTAGTTTTT
ATACTGGCAAACAGGAGCAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAATCTCCTCGCAGTACAGGTGGAT
CAAGTGATCGGTGAACTGGAAATCGTCATCAAACAGATCGAAGGACCGATTCCGAAAACGGCTGGGATTGCTGGGGCGAC
GGTTTTGGGCGATGGTACGGTGATGCCGATCGGCGATGTGTTAGAGTTAATCGACATCGCCAGGGGTCGTCTGCGTACCG
ATAACGGTGGTCTTTGGCGCCAACCTGCCCCCCCCGTAGGGGTGGAAACTAGGCAAAAATCGGGGGCTATGGTTCTGATT
GTCGATGATTCGATTACTGTCCGGGGATTGCTCTCTTTAAGCTTTAGTAAAGCCGGTTATCGTGTGGAACAGGCCCGGGA
TGGTCAAGAAGCTTGGGAAAAATTACGCGGCGGTTTGCCCTGTGATATCGTTTTCTGCGATATCGAGATGCCCCGCATGA
ATGGCCTAGAATTACTGTATAATTTGCAAAAAGACCCCCGATTAGCGTCGATTCCCGTGGCTTTATTGACTTCCCGAGGA
GCGGAACGTCATCGTCAGGTGGCGGCGACATTAGGGGCTAGTGGTTATTTTACCAAGCCCTACACGGAAAGAGATTTACT
CTCGGCGGCTGAAAGAATGATTGCGGGGGAAGTGTTACTAGCTAATAGTATTAAAGCGACTCGTAATCAGCCTTTATCCC
CCGATGCAACGATTATTGACAGTAATCCCGCTAATTTCTTTGCACAATCGACTCCTCGGGTCTTGATTGTCGATGATTCG
GTAACGGCGCGGGAAATGTTAGCGATTTCTTTGGTGAAAGCTGGTTATCGCATTGAAGAGGCCCGAGACGGTTTAGAAGC
ATGGGAAAAATTACGGGCTGGATTAGCTTGTGATCTGATTCTCTGCGATCTCGAAATGCCTCGCCTGAATGGGTTAGAAT
TGCTCTCTCGTCTGCAAGAGGATGAACAACTTCAGGGGATACCAGTAGCGATGATTACCTCGCGAGGGTCGCAAAAAATG
CAGCATCTCGCCGCTGCTAAAGGGGCAAAAGGTTATTTTGTCAAGCCCTATATTGAGGATGTTTTACTGTCGGCAGCCCA
ACGTTTAATCGCTGGTGAGGTGTTAATCCAAAAAGAAAGTCCCGCGGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(718-830)

Response regulator receiver domain (Response_reg)

(874-985)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(405-542)

CheW-like domain (CheW)

(549-685)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(199-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

62.461

94.816

0.592

Multiple sequence alignment