Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE77_RS22885 Genome accession   NZ_AP027440
Coordinates   4370469..4370984 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC556 isolate EC556     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4365469..4375984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE77_RS22840 (MUTS11_43890) csrA 4366190..4366375 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QUE77_RS22870 (MUTS11_43900) yqaB 4367699..4368265 (+) 567 WP_063086203.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE77_RS22875 (MUTS11_43910) yqaA 4368262..4368690 (+) 429 WP_001287454.1 YqaA family protein -
  QUE77_RS22880 (MUTS11_43920) gshA 4368763..4370319 (+) 1557 WP_063086205.1 glutamate--cysteine ligase -
  QUE77_RS22885 (MUTS11_43930) luxS 4370469..4370984 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE77_RS22890 tnpA 4371187..4371645 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  QUE77_RS22895 (MUTS11_43950) emrB 4371760..4373298 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE77_RS22900 (MUTS11_43960) emrA 4373315..4374487 (-) 1173 WP_021554174.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE77_RS22905 (MUTS11_43970) emrR 4374614..4375144 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE77_RS22910 (MUTS11_43980) ygaH 4375235..4375570 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=86012 QUE77_RS22885 WP_001130211.1 4370469..4370984(+) (luxS) [Escherichia coli strain EC556 isolate EC556]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86012 QUE77_RS22885 WP_001130211.1 4370469..4370984(+) (luxS) [Escherichia coli strain EC556 isolate EC556]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment