Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WCU20_RS02110 Genome accession   NZ_CP147541
Coordinates   453455..453820 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain GN06288     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448455..458820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU20_RS02080 (WCU20_02080) pyrR 449077..449589 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  WCU20_RS02085 (WCU20_02085) ruvX 449701..450135 (-) 435 WP_031673524.1 Holliday junction resolvase RuvX -
  WCU20_RS02090 (WCU20_02090) - 450135..450704 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  WCU20_RS02095 (WCU20_02095) - 450753..451646 (-) 894 WP_003084580.1 TonB family protein -
  WCU20_RS02100 (WCU20_02100) gshB 451793..452746 (-) 954 WP_031673523.1 glutathione synthase -
  WCU20_RS02105 (WCU20_02105) pilG 453001..453408 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  WCU20_RS02110 (WCU20_02110) pilH 453455..453820 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  WCU20_RS02115 (WCU20_02115) - 453871..454407 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  WCU20_RS02120 (WCU20_02120) pilJ 454492..456540 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  WCU20_RS02125 (WCU20_02125) pilK 456601..457476 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=860102 WCU20_RS02110 WP_003084587.1 453455..453820(+) (pilH) [Pseudomonas aeruginosa strain GN06288]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=860102 WCU20_RS02110 WP_003084587.1 453455..453820(+) (pilH) [Pseudomonas aeruginosa strain GN06288]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364