Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   WCU03_RS17060 Genome accession   NZ_CP147535
Coordinates   3564428..3565033 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GN03551     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3559428..3570033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU03_RS17040 (WCU03_17040) aes 3559569..3560528 (+) 960 WP_000801813.1 acetyl esterase -
  WCU03_RS17045 (WCU03_17045) hemH 3560525..3561487 (-) 963 WP_001250112.1 ferrochelatase -
  WCU03_RS17050 (WCU03_17050) adk 3561619..3562263 (-) 645 WP_001220233.1 adenylate kinase -
  WCU03_RS17055 (WCU03_17055) htpG 3562444..3564318 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  WCU03_RS17060 (WCU03_17060) recR 3564428..3565033 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  WCU03_RS17065 (WCU03_17065) ybaB 3565033..3565362 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  WCU03_RS17070 (WCU03_17070) dnaX 3565415..3567346 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  WCU03_RS17075 (WCU03_17075) apt 3567475..3568026 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  WCU03_RS17080 (WCU03_17080) ybaN 3568179..3568556 (-) 378 WP_001188905.1 DUF454 family protein -
  WCU03_RS17085 (WCU03_17085) priC 3568626..3569153 (+) 528 WP_000844860.1 primosomal replication protein N'' -
  WCU03_RS17090 (WCU03_17090) rsmS 3569167..3569328 (+) 162 WP_000051142.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=860066 WCU03_RS17060 WP_001195025.1 3564428..3565033(-) (recR) [Escherichia coli strain GN03551]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=860066 WCU03_RS17060 WP_001195025.1 3564428..3565033(-) (recR) [Escherichia coli strain GN03551]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443