Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WCU03_RS09160 Genome accession   NZ_CP147535
Coordinates   1964214..1964843 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain GN03551     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959214..1969843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU03_RS09140 (WCU03_09140) ycbZ 1959604..1961364 (-) 1761 WP_000156473.1 Lon protease family protein -
  WCU03_RS09145 (WCU03_09145) matP 1961550..1962002 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  WCU03_RS09150 (WCU03_09150) ompA 1962078..1963130 (-) 1053 WP_024175778.1 porin OmpA -
  WCU03_RS09155 (WCU03_09155) sulA 1963486..1963995 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WCU03_RS09160 (WCU03_09160) sxy/tfoX 1964214..1964843 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WCU03_RS09165 (WCU03_09165) yccS 1964806..1966968 (-) 2163 WP_000875033.1 YccS family putative transporter -
  WCU03_RS09170 (WCU03_09170) yccF 1966978..1967424 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WCU03_RS09175 (WCU03_09175) helD 1967547..1969601 (+) 2055 WP_338810591.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=860048 WCU03_RS09160 WP_000839153.1 1964214..1964843(+) (sxy/tfoX) [Escherichia coli strain GN03551]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=860048 WCU03_RS09160 WP_000839153.1 1964214..1964843(+) (sxy/tfoX) [Escherichia coli strain GN03551]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1