Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   WCU03_RS03700 Genome accession   NZ_CP147535
Coordinates   774945..776186 (+) Length   413 a.a.
NCBI ID   WP_016242961.1    Uniprot ID   -
Organism   Escherichia coli strain GN03551     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 769945..781186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU03_RS03685 (WCU03_03685) - 770460..772136 (+) 1677 WP_001301060.1 polysaccharide biosynthesis/export family protein -
  WCU03_RS03690 (WCU03_03690) kdsB 772146..772886 (+) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WCU03_RS03695 (WCU03_03695) - 772883..774910 (+) 2028 WP_016242962.1 capsular polysaccharide biosynthesis protein -
  WCU03_RS03700 (WCU03_03700) kpsS 774945..776186 (+) 1242 WP_016242961.1 capsular biosynthesis protein Regulator
  WCU03_RS03705 (WCU03_03705) - 776307..777647 (-) 1341 WP_001361241.1 glycosyltransferase family A protein -
  WCU03_RS03710 (WCU03_03710) - 777776..778945 (-) 1170 WP_000704785.1 nucleotide sugar dehydrogenase -
  WCU03_RS03715 (WCU03_03715) - 779094..779762 (-) 669 WP_001025464.1 acyltransferase -
  WCU03_RS03720 (WCU03_03720) glf 779789..780895 (-) 1107 WP_000272502.1 UDP-galactopyranose mutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 49220.04 Da        Isoelectric Point: 10.1559

>NTDB_id=860024 WCU03_RS03700 WP_016242961.1 774945..776186(+) (kpsS) [Escherichia coli strain GN03551]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKKD
KKDCIMLSKKTSQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=860024 WCU03_RS03700 WP_016242961.1 774945..776186(+) (kpsS) [Escherichia coli strain GN03551]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAAGAT
AAAAAAGATTGTATTATGCTATCAAAAAAAACATCACAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

95.884

0.38