Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   Q3V72_RS07340 Genome accession   NZ_CP130542
Coordinates   1541348..1542418 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA08-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536348..1547418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V72_RS07300 gcvPA 1536525..1537871 (-) 1347 WP_000019678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V72_RS07305 gcvT 1537891..1538982 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V72_RS07310 - 1539141..1539665 (-) 525 WP_001015121.1 shikimate kinase -
  Q3V72_RS07315 - 1539655..1539801 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V72_RS07320 comGF 1539898..1540395 (-) 498 WP_029694076.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V72_RS07325 comGE 1540313..1540612 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V72_RS07330 comGD 1540599..1541045 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V72_RS07335 comGC 1541023..1541334 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V72_RS07340 comGB 1541348..1542418 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V72_RS07345 comGA 1542390..1543364 (-) 975 WP_000697235.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V72_RS07350 - 1543416..1544039 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V72_RS07355 - 1544036..1544365 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V72_RS07360 - 1544365..1545351 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V72_RS07365 - 1545348..1545551 (-) 204 WP_000087561.1 YqgQ family protein -
  Q3V72_RS07370 - 1545532..1546995 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=860007 Q3V72_RS07340 WP_000776422.1 1541348..1542418(-) (comGB) [Staphylococcus aureus strain SA08-SX]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=860007 Q3V72_RS07340 WP_000776422.1 1541348..1542418(-) (comGB) [Staphylococcus aureus strain SA08-SX]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1