Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   Q3V72_RS07320 Genome accession   NZ_CP130542
Coordinates   1539898..1540395 (-) Length   165 a.a.
NCBI ID   WP_029694076.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA08-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534898..1545395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V72_RS07295 gcvPB 1535060..1536532 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  Q3V72_RS07300 gcvPA 1536525..1537871 (-) 1347 WP_000019678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V72_RS07305 gcvT 1537891..1538982 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V72_RS07310 - 1539141..1539665 (-) 525 WP_001015121.1 shikimate kinase -
  Q3V72_RS07315 - 1539655..1539801 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V72_RS07320 comGF 1539898..1540395 (-) 498 WP_029694076.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V72_RS07325 comGE 1540313..1540612 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V72_RS07330 comGD 1540599..1541045 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V72_RS07335 comGC 1541023..1541334 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V72_RS07340 comGB 1541348..1542418 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V72_RS07345 comGA 1542390..1543364 (-) 975 WP_000697235.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V72_RS07350 - 1543416..1544039 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V72_RS07355 - 1544036..1544365 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V72_RS07360 - 1544365..1545351 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2877

>NTDB_id=860003 Q3V72_RS07320 WP_029694076.1 1539898..1540395(-) (comGF) [Staphylococcus aureus strain SA08-SX]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIFV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=860003 Q3V72_RS07320 WP_029694076.1 1539898..1540395(-) (comGF) [Staphylococcus aureus strain SA08-SX]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTTTGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.364

100

0.964
  comGF Staphylococcus aureus N315

96.364

100

0.964