Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q3V68_RS08255 Genome accession   NZ_CP130540
Coordinates   1677896..1678342 (-) Length   148 a.a.
NCBI ID   WP_303259777.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA10-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1672896..1683342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V68_RS08225 gcvPA 1673822..1675168 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V68_RS08230 gcvT 1675188..1676279 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V68_RS08235 - 1676438..1676962 (-) 525 WP_001015116.1 shikimate kinase -
  Q3V68_RS08240 - 1676952..1677098 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V68_RS08245 comGF 1677195..1677692 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V68_RS08250 comGE 1677610..1677909 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V68_RS08255 comGD 1677896..1678342 (-) 447 WP_303259777.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V68_RS08260 comGC 1678320..1678631 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V68_RS08265 comGB 1678645..1679715 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V68_RS08270 comGA 1679687..1680661 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V68_RS08275 - 1680713..1681336 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V68_RS08280 - 1681333..1681662 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V68_RS08285 - 1681662..1682648 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V68_RS08290 - 1682645..1682848 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17157.35 Da        Isoelectric Point: 10.3312

>NTDB_id=859921 Q3V68_RS08255 WP_303259777.1 1677896..1678342(-) (comGD) [Staphylococcus aureus strain SA10-SX]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIPFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=859921 Q3V68_RS08255 WP_303259777.1 1677896..1678342(-) (comGD) [Staphylococcus aureus strain SA10-SX]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTCCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986