Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q3V88_RS07415 Genome accession   NZ_CP130537
Coordinates   1553983..1554429 (-) Length   148 a.a.
NCBI ID   WP_072433556.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA12-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1548983..1559429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS07385 gcvPA 1549909..1551255 (-) 1347 WP_000019678.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V88_RS07390 gcvT 1551275..1552366 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V88_RS07395 - 1552525..1553049 (-) 525 WP_001015121.1 shikimate kinase -
  Q3V88_RS07400 - 1553039..1553185 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V88_RS07405 comGF 1553282..1553779 (-) 498 WP_029694076.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V88_RS07410 comGE 1553697..1553996 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V88_RS07415 comGD 1553983..1554429 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V88_RS07420 comGC 1554407..1554718 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V88_RS07425 comGB 1554732..1555802 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V88_RS07430 comGA 1555774..1556748 (-) 975 WP_000697235.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V88_RS07435 - 1556800..1557423 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V88_RS07440 - 1557420..1557749 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V88_RS07445 - 1557749..1558735 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V88_RS07450 - 1558732..1558935 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17150.36 Da        Isoelectric Point: 10.3312

>NTDB_id=859837 Q3V88_RS07415 WP_072433556.1 1553983..1554429(-) (comGD) [Staphylococcus aureus strain SA12-SX]
MEKQLQIRKLSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=859837 Q3V88_RS07415 WP_072433556.1 1553983..1554429(-) (comGD) [Staphylococcus aureus strain SA12-SX]
ATGGAGAAGCAGTTGCAAATTAGAAAGCTGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993