Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   WBG99_RS05960 Genome accession   NZ_CP147520
Coordinates   1494400..1495038 (-) Length   212 a.a.
NCBI ID   WP_338900237.1    Uniprot ID   -
Organism   Streptomyces sp. TG1A-60     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489400..1500038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 1494400..1495038 (-) 639 - - Regulator

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22777.27 Da        Isoelectric Point: 6.3476

>NTDB_id=859696 WBG99_RS05960 WP_338900237.1 1494400..1495038(-) (vraR) [Streptomyces sp. TG1A-60]
MIVDDHAVVRRGIRAYLEVLDDMEVAAEAADGQEALTRLDAMAAHRELPDVVLIDLLMPRMDGATAIGVIKQRHPGLRVV
VLTSFGEMERVHAALAQGAAGYLLKDAEAGEVVAAIRAAARGEVFLDPAVARGLTQEIVSPPTGLASLTSRERDVLVLVA
EGRSNQQIADELVISERTARTHVSNVLRKLRLTSRTQAALFAVRQGLVPPRG

Nucleotide


Download         Length: 639 bp        

>NTDB_id=859696 WBG99_RS05960 WP_338900237.1 1494400..1495038(-) (vraR) [Streptomyces sp. TG1A-60]
CTGATCGTCGACGACCACGCCGTCGTACGCCGCGGAATCCGTGCCTATCTGGAGGTCCTGGACGACATGGAGGTGGCCGC
GGAGGCGGCCGACGGGCAGGAGGCCCTCACCCGGCTCGACGCCATGGCCGCGCACCGGGAACTGCCGGACGTGGTGCTGA
TCGACCTGCTCATGCCCAGGATGGACGGGGCGACGGCGATCGGCGTGATCAAGCAGCGCCACCCCGGCCTGCGGGTCGTG
GTGCTCACCAGCTTCGGTGAGATGGAACGCGTCCACGCGGCGCTCGCCCAGGGGGCCGCCGGCTATCTGCTCAAGGACGC
CGAAGCGGGTGAGGTGGTCGCCGCGATCCGCGCCGCCGCCCGGGGTGAGGTCTTCCTCGACCCCGCGGTGGCCAGGGGAC
TCACCCAGGAGATCGTTTCGCCCCCGACCGGGCTCGCCTCGCTCACGAGCCGGGAACGCGACGTTCTCGTCCTGGTCGCC
GAGGGGCGGTCGAACCAGCAGATCGCCGACGAACTGGTGATCAGCGAGCGCACCGCCCGCACCCATGTGAGCAACGTCCT
GCGCAAACTCCGGCTCACCTCCCGGACCCAGGCGGCGTTGTTCGCGGTGCGGCAGGGGCTGGTGCCACCGAGGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(1-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.385

98.113

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

35.088

100

0.377