Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WBM82_RS11945 Genome accession   NZ_CP147494
Coordinates   2254319..2254939 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   P39792
Organism   Bacillus subtilis strain YT1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2249319..2259939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS11905 (WBM82_11950) ypqE 2250450..2250956 (-) 507 WP_069703931.1 PTS glucose transporter subunit IIA -
  WBM82_RS11910 (WBM82_11955) ypqA 2251094..2251513 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  WBM82_RS11915 (WBM82_11960) yppG 2251534..2251911 (-) 378 WP_014477159.1 YppG family protein -
  WBM82_RS11920 (WBM82_11965) yppF 2252099..2252287 (+) 189 WP_003230690.1 YppF family protein -
  WBM82_RS11925 (WBM82_11970) yppE 2252326..2252697 (-) 372 WP_015714151.1 YppE family protein -
  WBM82_RS11930 (WBM82_11975) yppD 2252743..2252988 (-) 246 WP_015251831.1 YppD family protein -
  WBM82_RS11935 (WBM82_11980) sspM 2253187..2253291 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WBM82_RS11940 (WBM82_11985) yppC 2253316..2254278 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  WBM82_RS11945 (WBM82_11990) recU 2254319..2254939 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WBM82_RS11950 (WBM82_11995) ponA 2254961..2257705 (+) 2745 WP_217024382.1 PBP1A family penicillin-binding protein -
  WBM82_RS11955 (WBM82_12000) ypoC 2257781..2258275 (-) 495 WP_009967579.1 YpoC family protein -
  WBM82_RS11960 (WBM82_12005) nth 2258272..2258931 (-) 660 WP_009967580.1 endonuclease III -
  WBM82_RS11965 (WBM82_12010) dnaD 2258950..2259648 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=859531 WBM82_RS11945 WP_004399067.1 2254319..2254939(+) (recU) [Bacillus subtilis strain YT1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=859531 WBM82_RS11945 WP_004399067.1 2254319..2254939(+) (recU) [Bacillus subtilis strain YT1]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1RZN
  PDB 1ZP7
  PDB 5FDK

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1