Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WBM82_RS05945 Genome accession   NZ_CP147494
Coordinates   1060103..1060846 (+) Length   247 a.a.
NCBI ID   WP_024571662.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055103..1065846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS05910 (WBM82_05935) yhaI 1055433..1055774 (+) 342 WP_009966921.1 YhaI family protein -
  WBM82_RS05915 (WBM82_05940) scoC 1055771..1056382 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  WBM82_RS05920 (WBM82_05945) yhaH 1056560..1056916 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  WBM82_RS05925 (WBM82_05950) - 1057046..1057237 (+) 192 WP_024571664.1 hypothetical protein -
  WBM82_RS05930 (WBM82_05955) trpP 1057311..1057829 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  WBM82_RS05935 (WBM82_05960) serC 1057953..1059032 (-) 1080 WP_032725316.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  WBM82_RS05940 (WBM82_05965) hinT 1059179..1059616 (-) 438 WP_003233231.1 HIT family protein -
  WBM82_RS05945 (WBM82_05970) pptA 1060103..1060846 (+) 744 WP_024571662.1 ABC transporter ATP-binding protein EcsA Regulator
  WBM82_RS05950 (WBM82_05975) ecsB 1060839..1062065 (+) 1227 WP_110109608.1 ABC transporter permease EcsB -
  WBM82_RS05955 (WBM82_05980) ecsC 1062085..1062795 (+) 711 WP_046160232.1 EcsC family protein -
  WBM82_RS05960 (WBM82_05985) sndC 1062813..1064003 (-) 1191 WP_248719442.1 N-acetyl amino acid acetylase SndC -
  WBM82_RS05965 (WBM82_05990) - 1064075..1065466 (-) 1392 WP_101172518.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27637.14 Da        Isoelectric Point: 6.1613

>NTDB_id=859484 WBM82_RS05945 WP_024571662.1 1060103..1060846(+) (pptA) [Bacillus subtilis strain YT1]
MSLLSVKDLTGGYTRNPVLKSVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIALNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=859484 WBM82_RS05945 WP_024571662.1 1060103..1060846(+) (pptA) [Bacillus subtilis strain YT1]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAGCGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGCAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGCATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.904

96.761

0.551