Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   WBM82_RS02900 Genome accession   NZ_CP147494
Coordinates   468797..469231 (+) Length   144 a.a.
NCBI ID   WP_032677491.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463797..474231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS02870 (WBM82_02875) ydaD 464445..465305 (+) 861 WP_033883707.1 SDR family oxidoreductase -
  WBM82_RS02875 (WBM82_02880) lyxE 465321..465824 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  WBM82_RS02880 (WBM82_02885) ydaF 465912..466463 (+) 552 WP_248719459.1 GNAT family protein -
  WBM82_RS02885 (WBM82_02890) ydaG 466541..466963 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  WBM82_RS02890 (WBM82_02895) amj 467469..468278 (+) 810 WP_003234394.1 lipid II flippase Amj -
  WBM82_RS02895 (WBM82_02900) ydzA 468322..468612 (-) 291 WP_003234392.1 DUF3817 domain-containing protein -
  WBM82_RS02900 (WBM82_02905) lrpC 468797..469231 (+) 435 WP_032677491.1 transcriptional regulator LrpC Machinery gene
  WBM82_RS02905 (WBM82_02910) topB 469296..471479 (+) 2184 WP_003234388.1 DNA topoisomerase III -
  WBM82_RS02910 (WBM82_02915) epsJ 471682..472770 (+) 1089 WP_248719460.1 lipoprotein YdaJ -
  WBM82_RS02915 (WBM82_02920) epsK 472751..473602 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16420.04 Da        Isoelectric Point: 8.2359

>NTDB_id=859472 WBM82_RS02900 WP_032677491.1 468797..469231(+) (lrpC) [Bacillus subtilis strain YT1]
MKLDQIDLNIIEVLKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=859472 WBM82_RS02900 WP_032677491.1 468797..469231(+) (lrpC) [Bacillus subtilis strain YT1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGTGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993