Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WBI56_RS18710 Genome accession   NZ_CP147492
Coordinates   3621430..3622563 (-) Length   377 a.a.
NCBI ID   WP_256683041.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616430..3627563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS18665 (WBI56_18665) ywnA 3616560..3616961 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  WBI56_RS18670 (WBI56_18670) ureC 3617096..3618805 (-) 1710 WP_086344415.1 urease subunit alpha -
  WBI56_RS18675 (WBI56_18675) ureB 3618802..3619176 (-) 375 WP_015251023.1 urease subunit beta -
  WBI56_RS18680 (WBI56_18680) ureA 3619173..3619490 (-) 318 WP_003227724.1 urease subunit gamma -
  WBI56_RS18685 (WBI56_18685) - 3619685..3619843 (-) 159 WP_124059325.1 hypothetical protein -
  WBI56_RS18690 (WBI56_18690) - 3619944..3620012 (-) 69 WP_144486809.1 hypothetical protein -
  WBI56_RS18695 (WBI56_18695) - 3620109..3620321 (-) 213 Protein_3621 urea ABC transporter substrate-binding protein -
  WBI56_RS18700 (WBI56_18700) csbD 3620534..3620722 (-) 189 WP_003227718.1 stress response protein CsbD -
  WBI56_RS18705 (WBI56_18705) - 3620795..3621274 (-) 480 WP_003244390.1 hypothetical protein -
  WBI56_RS18710 (WBI56_18710) rapC 3621430..3622563 (-) 1134 WP_256683041.1 response regulator aspartate phosphatase RapB Regulator
  WBI56_RS18715 (WBI56_18715) moaA 3622755..3623780 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  WBI56_RS18720 (WBI56_18720) fdhD 3623796..3624584 (-) 789 WP_327825978.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  WBI56_RS18725 (WBI56_18725) - 3624830..3624991 (-) 162 WP_003227706.1 hypothetical protein -
  WBI56_RS18730 (WBI56_18730) ywmD 3625086..3625760 (-) 675 WP_003243553.1 VWA domain-containing protein -
  WBI56_RS18735 (WBI56_18735) - 3625813..3625953 (-) 141 WP_014478246.1 hypothetical protein -
  WBI56_RS18740 (WBI56_18740) ywmC 3626084..3626767 (-) 684 WP_338731330.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.8005

>NTDB_id=859438 WBI56_RS18710 WP_256683041.1 3621430..3622563(-) (rapC) [Bacillus subtilis strain MC4-2]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=859438 WBI56_RS18710 WP_256683041.1 3621430..3622563(-) (rapC) [Bacillus subtilis strain MC4-2]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424