Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WBI56_RS15100 Genome accession   NZ_CP147492
Coordinates   2913263..2913973 (-) Length   236 a.a.
NCBI ID   WP_338730693.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908263..2918973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS15080 (WBI56_15080) cysK 2908315..2909250 (+) 936 WP_003229237.1 cysteine synthase A -
  WBI56_RS15085 (WBI56_15085) pepV 2909284..2910675 (-) 1392 WP_338730691.1 dipeptidase PepV -
  WBI56_RS15090 (WBI56_15090) pbuO 2910772..2912070 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  WBI56_RS15095 (WBI56_15095) ythQ 2912109..2913266 (-) 1158 WP_338730692.1 ABC transporter permease -
  WBI56_RS15100 (WBI56_15100) pptA 2913263..2913973 (-) 711 WP_338730693.1 ABC transporter ATP-binding protein Regulator
  WBI56_RS15105 (WBI56_15105) ytzE 2914263..2914484 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  WBI56_RS15110 (WBI56_15110) rsuA 2914606..2915325 (-) 720 WP_017695479.1 pseudouridine synthase -
  WBI56_RS15115 (WBI56_15115) murJ 2915394..2917028 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  WBI56_RS15120 (WBI56_15120) ytfP 2917231..2918493 (+) 1263 WP_338734170.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26706.85 Da        Isoelectric Point: 5.9025

>NTDB_id=859419 WBI56_RS15100 WP_338730693.1 2913263..2913973(-) (pptA) [Bacillus subtilis strain MC4-2]
MTKLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGRIAWNDCSFAYIPEHPSFYE
ELTLWEHWDLINTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=859419 WBI56_RS15100 WP_338730693.1 2913263..2913973(-) (pptA) [Bacillus subtilis strain MC4-2]
TTGACAAAATTACTTGAGGCTTCGATAGAGCAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCGTATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTGGGATCTGATCAACACACTTCACGGCATTGAAGAGAGGGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTTCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

43.59

99.153

0.432
  pptA Streptococcus thermophilus LMD-9

43.162

99.153

0.428