Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WBI56_RS13035 Genome accession   NZ_CP147492
Coordinates   2525951..2527078 (+) Length   375 a.a.
NCBI ID   WP_188323148.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2520951..2532078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS13015 (WBI56_13015) - 2522010..2522140 (+) 131 Protein_2514 DUF255 domain-containing protein -
  WBI56_RS13020 (WBI56_13020) - 2522541..2523554 (-) 1014 WP_188323146.1 NADP-dependent oxidoreductase -
  WBI56_RS13025 (WBI56_13025) - 2523821..2524570 (-) 750 WP_188323147.1 SDR family NAD(P)-dependent oxidoreductase -
  WBI56_RS13030 (WBI56_13030) - 2524630..2525205 (-) 576 WP_103803386.1 TetR/AcrR family transcriptional regulator -
  WBI56_RS13035 (WBI56_13035) rapC 2525951..2527078 (+) 1128 WP_188323148.1 response regulator aspartate phosphatase RapE Regulator
  WBI56_RS13040 (WBI56_13040) phrE 2527068..2527202 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  WBI56_RS13045 (WBI56_13045) - 2527312..2527471 (+) 160 Protein_2520 hypothetical protein -
  WBI56_RS13050 (WBI56_13050) - 2527840..2529660 (+) 1821 WP_338730600.1 T7SS effector LXG polymorphic toxin -
  WBI56_RS13055 (WBI56_13055) - 2529673..2530113 (+) 441 WP_076458154.1 SMI1/KNR4 family protein -
  WBI56_RS13060 (WBI56_13060) - 2530186..2530521 (+) 336 WP_076458155.1 tRNA-Val4 -
  WBI56_RS13065 (WBI56_13065) - 2530582..2531022 (+) 441 WP_076458156.1 SMI1/KNR4 family protein -
  WBI56_RS13070 (WBI56_13070) - 2531121..2531572 (+) 452 Protein_2525 SMI1/KNR4 family protein -
  WBI56_RS13075 (WBI56_13075) cdiI 2531669..2532028 (+) 360 WP_338730601.1 ribonuclease toxin immunity protein CdiI -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44582.48 Da        Isoelectric Point: 7.7585

>NTDB_id=859403 WBI56_RS13035 WP_188323148.1 2525951..2527078(+) (rapC) [Bacillus subtilis strain MC4-2]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPTDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGKYTKAITYYKKAECKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=859403 WBI56_RS13035 WP_188323148.1 2525951..2527078(+) (rapC) [Bacillus subtilis strain MC4-2]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATCGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGAGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TGATGGCCTTTCGCCATAAAATTATGTTAGAATACACGCTGCCAACTGATGAAAATCGAATGGAACTTTCAGAATATTTA
AAGAAAATAGAAGGGCATAAGAAAAAACTAGATAATATGCGCGCTTATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTAAATACACAAAGGCCATTACATATTACAAAAAAGCTGAATGCAAAATTCCAACGATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAGTTATCCGAAGTCTATTATCATATGAAAATGACTCACATCTCAATGCACTACGCTGAA
CTTTCATACAATATCTATAAAAAACATGAACTTTATTCTGTTCGGCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCTGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTACTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(259-286)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.633

100

0.411
  rapF Bacillus subtilis subsp. subtilis str. 168

37.931

100

0.381