Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   WBI56_RS11585 Genome accession   NZ_CP147492
Coordinates   2271993..2273483 (-) Length   496 a.a.
NCBI ID   WP_017695904.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2266993..2278483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS11555 (WBI56_11555) gudB 2267138..2268412 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  WBI56_RS11560 (WBI56_11560) mecB 2268568..2269152 (-) 585 WP_003230533.1 genetic competence negative regulator -
  WBI56_RS11565 (WBI56_11565) ypbG 2269311..2270090 (-) 780 WP_163130695.1 metallophosphoesterase -
  WBI56_RS11570 (WBI56_11570) ypbF 2270176..2270619 (-) 444 WP_076458064.1 YpbF family protein -
  WBI56_RS11575 (WBI56_11575) ypbE 2270682..2271413 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  WBI56_RS11580 (WBI56_11580) ypbD 2271364..2271966 (-) 603 WP_180960812.1 CPBP family intramembrane glutamic endopeptidase -
  WBI56_RS11585 (WBI56_11585) recS 2271993..2273483 (-) 1491 WP_017695904.1 ATP-dependent DNA helicase RecQ Machinery gene
  WBI56_RS11590 (WBI56_11590) gmmB 2273476..2274534 (-) 1059 WP_338734160.1 helix-turn-helix domain-containing protein -
  WBI56_RS11595 (WBI56_11595) fer 2274800..2275048 (+) 249 WP_003225461.1 ferredoxin -
  WBI56_RS11600 (WBI56_11600) fmnP 2275088..2275660 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  WBI56_RS11605 (WBI56_11605) serA 2276157..2277734 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56535.08 Da        Isoelectric Point: 6.3928

>NTDB_id=859385 WBI56_RS11585 WP_017695904.1 2271993..2273483(-) (recS) [Bacillus subtilis strain MC4-2]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMYRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=859385 WBI56_RS11585 WP_017695904.1 2271993..2273483(-) (recS) [Bacillus subtilis strain MC4-2]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGGCAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAATCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCCTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGTACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996