Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   WBI56_RS09180 Genome accession   NZ_CP147492
Coordinates   1759718..1760149 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain MC4-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754718..1765149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS09160 (WBI56_09160) spoVS 1755279..1755539 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  WBI56_RS09165 (WBI56_09165) tdh 1755805..1756848 (+) 1044 WP_076457704.1 L-threonine 3-dehydrogenase -
  WBI56_RS09170 (WBI56_09170) kbl 1756861..1758039 (+) 1179 WP_338733833.1 glycine C-acetyltransferase -
  WBI56_RS09175 (WBI56_09175) miaB 1758187..1759716 (+) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  WBI56_RS09180 (WBI56_09180) ymcA 1759718..1760149 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  WBI56_RS09185 (WBI56_09185) cotE 1760403..1760948 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  WBI56_RS09190 (WBI56_09190) hexA 1761081..1763657 (+) 2577 WP_338733837.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=859375 WBI56_RS09180 WP_003231834.1 1759718..1760149(+) (ymcA) [Bacillus subtilis strain MC4-2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=859375 WBI56_RS09180 WP_003231834.1 1759718..1760149(+) (ymcA) [Bacillus subtilis strain MC4-2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1