Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WBI56_RS06195 Genome accession   NZ_CP147492
Coordinates   1200535..1202364 (+) Length   609 a.a.
NCBI ID   WP_003245178.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195535..1207364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS06160 (WBI56_06160) yjbC 1195995..1196573 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  WBI56_RS06165 (WBI56_06165) spx 1196754..1197149 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  WBI56_RS06170 (WBI56_06170) yjbE 1197404..1198060 (-) 657 WP_338733216.1 TerC family protein -
  WBI56_RS06175 (WBI56_06175) - 1198230..1198370 (+) 141 WP_119122854.1 hypothetical protein -
  WBI56_RS06180 (WBI56_06180) mecA 1198337..1198993 (+) 657 WP_003239278.1 adaptor protein MecA Regulator
  WBI56_RS06185 (WBI56_06185) - 1198988..1199110 (-) 123 WP_021479547.1 hypothetical protein -
  WBI56_RS06190 (WBI56_06190) coiA 1199154..1200305 (+) 1152 WP_338733219.1 competence protein CoiA Machinery gene
  WBI56_RS06195 (WBI56_06195) pepF 1200535..1202364 (+) 1830 WP_003245178.1 oligoendopeptidase F Regulator
  WBI56_RS06200 (WBI56_06200) - 1202402..1202569 (-) 168 WP_003244944.1 hypothetical protein -
  WBI56_RS06205 (WBI56_06205) spxH 1202883..1203782 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  WBI56_RS06210 (WBI56_06210) yjbI 1203779..1204177 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  WBI56_RS06215 (WBI56_06215) cwlQ 1204432..1205166 (-) 735 WP_338733223.1 bifunctional muramidase/murein lytic transglycosylase -
  WBI56_RS06220 (WBI56_06220) yjbK 1205181..1205753 (-) 573 WP_338733225.1 CYTH domain-containing protein -
  WBI56_RS06225 (WBI56_06225) - 1205878..1206246 (+) 369 WP_024573346.1 hypothetical protein -
  WBI56_RS06230 (WBI56_06230) yjbM 1206275..1206910 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70085.95 Da        Isoelectric Point: 5.1562

>NTDB_id=859353 WBI56_RS06195 WP_003245178.1 1200535..1202364(+) (pepF) [Bacillus subtilis strain MC4-2]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=859353 WBI56_RS06195 WP_003245178.1 1200535..1202364(+) (pepF) [Bacillus subtilis strain MC4-2]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAGGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTATCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCTTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
TACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAGAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACAACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCACTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTCGTGAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CACTGAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCGGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCGCCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGCCTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGAATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476