Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WBI56_RS05425 Genome accession   NZ_CP147492
Coordinates   1047321..1048064 (+) Length   247 a.a.
NCBI ID   WP_024571662.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042321..1053064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS05390 (WBI56_05390) yhaI 1042650..1042991 (+) 342 WP_009966921.1 YhaI family protein -
  WBI56_RS05395 (WBI56_05395) scoC 1042988..1043599 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  WBI56_RS05400 (WBI56_05400) yhaH 1043777..1044133 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  WBI56_RS05405 (WBI56_05405) - 1044263..1044454 (+) 192 WP_003233238.1 hypothetical protein -
  WBI56_RS05410 (WBI56_05410) trpP 1044528..1045046 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  WBI56_RS05415 (WBI56_05415) serC 1045171..1046250 (-) 1080 WP_024571663.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  WBI56_RS05420 (WBI56_05420) hinT 1046397..1046834 (-) 438 WP_003233231.1 HIT family protein -
  WBI56_RS05425 (WBI56_05425) pptA 1047321..1048064 (+) 744 WP_024571662.1 ABC transporter ATP-binding protein EcsA Regulator
  WBI56_RS05430 (WBI56_05430) ecsB 1048057..1049283 (+) 1227 WP_338733025.1 ABC transporter permease EcsB -
  WBI56_RS05435 (WBI56_05435) ecsC 1049303..1050013 (+) 711 WP_043857218.1 EcsC family protein -
  WBI56_RS05440 (WBI56_05440) sndC 1050029..1051219 (-) 1191 WP_080529130.1 N-acetyl amino acid acetylase SndC -
  WBI56_RS05445 (WBI56_05445) - 1051292..1052683 (-) 1392 WP_338733030.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27637.14 Da        Isoelectric Point: 6.1613

>NTDB_id=859336 WBI56_RS05425 WP_024571662.1 1047321..1048064(+) (pptA) [Bacillus subtilis strain MC4-2]
MSLLSVKDLTGGYTRNPVLKSVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIALNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=859336 WBI56_RS05425 WP_024571662.1 1047321..1048064(+) (pptA) [Bacillus subtilis strain MC4-2]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAGCGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGCATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTATATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

96.761

0.555
  pptA Streptococcus thermophilus LMD-9

56.904

96.761

0.551