Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE57_RS22860 Genome accession   NZ_AP027436
Coordinates   4368751..4369266 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EC571 isolate EC571     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4363751..4374266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE57_RS22815 (MUTS10_43800) csrA 4364472..4364657 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QUE57_RS22845 (MUTS10_43810) yqaB 4365981..4366547 (+) 567 WP_063086203.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE57_RS22850 (MUTS10_43820) yqaA 4366544..4366972 (+) 429 WP_001287454.1 YqaA family protein -
  QUE57_RS22855 (MUTS10_43830) gshA 4367045..4368601 (+) 1557 WP_063086205.1 glutamate--cysteine ligase -
  QUE57_RS22860 (MUTS10_43840) luxS 4368751..4369266 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  QUE57_RS22865 tnpA 4369469..4369927 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  QUE57_RS22870 (MUTS10_43860) emrB 4370042..4371580 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE57_RS22875 (MUTS10_43870) emrA 4371597..4372769 (-) 1173 WP_021554174.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE57_RS22880 (MUTS10_43880) emrR 4372896..4373426 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE57_RS22885 (MUTS10_43890) ygaH 4373517..4373852 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=85932 QUE57_RS22860 WP_001130211.1 4368751..4369266(+) (luxS) [Escherichia coli strain EC571 isolate EC571]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85932 QUE57_RS22860 WP_001130211.1 4368751..4369266(+) (luxS) [Escherichia coli strain EC571 isolate EC571]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment