Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   WBI56_RS00330 Genome accession   NZ_CP147492
Coordinates   59648..59878 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain MC4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54648..64878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS00300 (WBI56_00300) ridA 54812..55189 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  WBI56_RS00305 (WBI56_00305) spoVG 55384..55677 (+) 294 WP_003218346.1 septation regulator SpoVG -
  WBI56_RS00310 (WBI56_00310) glmU 55870..57240 (+) 1371 WP_041351140.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  WBI56_RS00315 (WBI56_00315) prs 57263..58216 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  WBI56_RS00320 (WBI56_00320) ctc 58301..58915 (+) 615 WP_134982170.1 50S ribosomal protein L25/general stress protein Ctc -
  WBI56_RS00325 (WBI56_00325) pth 59022..59588 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  WBI56_RS00330 (WBI56_00330) subA/fin 59648..59878 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  WBI56_RS00335 (WBI56_00335) mfd 59948..63481 (+) 3534 WP_338731925.1 transcription-repair coupling factor -
  WBI56_RS00340 (WBI56_00340) spoVT 63617..64153 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=859307 WBI56_RS00330 WP_003243417.1 59648..59878(+) (subA/fin) [Bacillus subtilis strain MC4-2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=859307 WBI56_RS00330 WP_003243417.1 59648..59878(+) (subA/fin) [Bacillus subtilis strain MC4-2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1