Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Q3V56_RS07890 Genome accession   NZ_CP130518
Coordinates   1644709..1645395 (-) Length   228 a.a.
NCBI ID   WP_078055782.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA25-SX     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1639709..1650395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V56_RS07870 rpsT 1640623..1640874 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  Q3V56_RS07875 holA 1640919..1641893 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  Q3V56_RS07880 comEC 1641950..1644151 (-) 2202 WP_303075139.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q3V56_RS07885 - 1644156..1644617 (-) 462 WP_000439693.1 ComE operon protein 2 -
  Q3V56_RS07890 comEA 1644709..1645395 (-) 687 WP_078055782.1 ComEA family DNA-binding protein Machinery gene
  Q3V56_RS07895 - 1645435..1646151 (-) 717 WP_000942456.1 class I SAM-dependent methyltransferase -
  Q3V56_RS07900 rsfS 1646154..1646507 (-) 354 WP_001088020.1 ribosome silencing factor -
  Q3V56_RS07905 yqeK 1646508..1647092 (-) 585 WP_001017838.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  Q3V56_RS07910 nadD 1647082..1647651 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  Q3V56_RS07915 yhbY 1647654..1647944 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  Q3V56_RS07920 aroE 1647948..1648754 (-) 807 WP_000666767.1 shikimate dehydrogenase -
  Q3V56_RS07925 yqeH 1648768..1649868 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25761.45 Da        Isoelectric Point: 9.6753

>NTDB_id=859282 Q3V56_RS07890 WP_078055782.1 1644709..1645395(-) (comEA) [Staphylococcus aureus strain SA25-SX]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=859282 Q3V56_RS07890 WP_078055782.1 1644709..1645395(-) (comEA) [Staphylococcus aureus strain SA25-SX]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCTAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTGCTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
GAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

98.678

99.561

0.982