Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   Q3V56_RS07650 Genome accession   NZ_CP130518
Coordinates   1597854..1598300 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA25-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592854..1603300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V56_RS07620 gcvPA 1593780..1595126 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V56_RS07625 gcvT 1595146..1596237 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V56_RS07630 - 1596396..1596920 (-) 525 WP_001015116.1 shikimate kinase -
  Q3V56_RS07635 - 1596910..1597056 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V56_RS07640 comGF 1597153..1597650 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V56_RS07645 comGE 1597568..1597867 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  Q3V56_RS07650 comGD 1597854..1598300 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V56_RS07655 comGC 1598278..1598589 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V56_RS07660 comGB 1598603..1599673 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V56_RS07665 comGA 1599645..1600619 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V56_RS07670 - 1600671..1601294 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V56_RS07675 - 1601291..1601620 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V56_RS07680 - 1601620..1602606 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V56_RS07685 - 1602603..1602806 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=859276 Q3V56_RS07650 WP_001796473.1 1597854..1598300(-) (comGD) [Staphylococcus aureus strain SA25-SX]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=859276 Q3V56_RS07650 WP_001796473.1 1597854..1598300(-) (comGD) [Staphylococcus aureus strain SA25-SX]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993