Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K6J79_RS01115 Genome accession   NZ_AP024555
Coordinates   250763..251281 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain IDH-03506     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 245763..256281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J79_RS01090 rimM 245872..246426 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  K6J79_RS01095 rpsP 246454..246702 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  K6J79_RS01100 ffh 246938..248323 (-) 1386 WP_000462720.1 signal recognition particle protein -
  K6J79_RS01105 - 248536..249330 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  K6J79_RS01110 - 249413..250693 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  K6J79_RS01115 luxS 250763..251281 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  K6J79_RS01120 gshA 251330..252904 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  K6J79_RS01125 - 253016..255871 (-) 2856 WP_001233047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=85915 K6J79_RS01115 WP_001130227.1 250763..251281(-) (luxS) [Vibrio cholerae strain IDH-03506]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=85915 K6J79_RS01115 WP_001130227.1 250763..251281(-) (luxS) [Vibrio cholerae strain IDH-03506]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment