Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   K6J80_RS11955 Genome accession   NZ_AP024553
Coordinates   2646749..2647756 (-) Length   335 a.a.
NCBI ID   WP_000116737.1    Uniprot ID   O51804
Organism   Vibrio cholerae strain IDH-03329     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2641749..2652756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS11945 cysM 2642913..2643800 (+) 888 WP_001279365.1 cysteine synthase CysM -
  K6J80_RS11950 mutS 2644068..2646656 (+) 2589 WP_001894770.1 DNA mismatch repair protein MutS -
  K6J80_RS11955 rpoS 2646749..2647756 (-) 1008 WP_000116737.1 RNA polymerase sigma factor RpoS Regulator
  K6J80_RS11960 nlpD 2647830..2648765 (-) 936 WP_000177568.1 murein hydrolase activator NlpD -
  K6J80_RS11965 - 2648765..2649391 (-) 627 WP_000002982.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  K6J80_RS11970 surE 2649384..2650136 (-) 753 WP_000698379.1 5'/3'-nucleotidase SurE -
  K6J80_RS11975 truD 2650138..2651223 (-) 1086 WP_000129752.1 tRNA pseudouridine(13) synthase TruD -
  K6J80_RS11980 ispF 2651253..2651729 (-) 477 WP_000619209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K6J80_RS11985 ispD 2651726..2652424 (-) 699 WP_001061951.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  K6J80_RS11990 ftsB 2652421..2652705 (-) 285 WP_001263189.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38534.39 Da        Isoelectric Point: 4.3648

>NTDB_id=85899 K6J80_RS11955 WP_000116737.1 2646749..2647756(-) (rpoS) [Vibrio cholerae strain IDH-03329]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=85899 K6J80_RS11955 WP_000116737.1 2646749..2647756(-) (rpoS) [Vibrio cholerae strain IDH-03329]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O51804

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1

Multiple sequence alignment