Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WAZ79_RS18985 Genome accession   NZ_CP147099
Coordinates   3484841..3485308 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain KOr024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3479841..3490308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ79_RS18960 (WAZ79_18950) rpsG 3479982..3480452 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  WAZ79_RS18965 (WAZ79_18955) fusA 3480549..3482663 (+) 2115 WP_000124700.1 elongation factor G -
  WAZ79_RS18970 (WAZ79_18960) tuf 3482734..3483918 (+) 1185 WP_000031783.1 elongation factor Tu -
  WAZ79_RS18975 (WAZ79_18965) bfd 3484101..3484295 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  WAZ79_RS18980 (WAZ79_18970) bfr 3484368..3484844 (+) 477 WP_000675515.1 bacterioferritin -
  WAZ79_RS18985 (WAZ79_18975) pilD 3484841..3485308 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  WAZ79_RS18990 (WAZ79_18980) rpsJ 3485687..3485998 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  WAZ79_RS18995 (WAZ79_18985) rplC 3486031..3486660 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  WAZ79_RS19000 (WAZ79_18990) rplD 3486671..3487276 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  WAZ79_RS19005 (WAZ79_18995) rplW 3487273..3487575 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  WAZ79_RS19010 (WAZ79_19000) rplB 3487593..3488414 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  WAZ79_RS19015 (WAZ79_19005) rpsS 3488431..3488709 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  WAZ79_RS19020 (WAZ79_19010) rplV 3488724..3489056 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  WAZ79_RS19025 (WAZ79_19015) rpsC 3489074..3489775 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  WAZ79_RS19030 (WAZ79_19020) rplP 3489788..3490198 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=858835 WAZ79_RS18985 WP_000340171.1 3484841..3485308(-) (pilD) [Escherichia coli strain KOr024]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=858835 WAZ79_RS18985 WP_000340171.1 3484841..3485308(-) (pilD) [Escherichia coli strain KOr024]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361