Detailed information NTG0858747

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WAZ86_RS16440
• Genome accession: NZ_CP147084
• Coordinates: 3343014..3344006 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KTa005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3338014..3349006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAZ86_RS16420 (WAZ86_16420)	otnK	3338789..3340051 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
WAZ86_RS16425 (WAZ86_16425)	ygbL	3340048..3340686 (+)	639	WP_001278994.1	aldolase	-
WAZ86_RS16430 (WAZ86_16430)	ygbM	3340691..3341467 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
WAZ86_RS16435 (WAZ86_16435)	ygbN	3341556..3342920 (+)	1365	WP_021547117.1	GntP family transporter	-
WAZ86_RS16440 (WAZ86_16440)	rpoS	3343014..3344006 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
WAZ86_RS16445 (WAZ86_16445)	nlpD	3344069..3345163 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
WAZ86_RS16450 (WAZ86_16450)	pcm	3345348..3345974 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
WAZ86_RS16455 (WAZ86_16455)	surE	3345968..3346729 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
WAZ86_RS16460 (WAZ86_16460)	truD	3346710..3347759 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
WAZ86_RS16465 (WAZ86_16465)	ispF	3347756..3348235 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WAZ86_RS16470 (WAZ86_16470)	ispD	3348235..3348945 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=858747 WAZ86_RS16440 WP_000081550.1 3343014..3344006(-) (rpoS) [Escherichia coli strain KTa005]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=858747 WAZ86_RS16440 WP_000081550.1 3343014..3344006(-) (rpoS) [Escherichia coli strain KTa005]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715