Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ86_RS07765 Genome accession   NZ_CP147084
Coordinates   1588574..1589203 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain KTa005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583574..1594203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ86_RS07745 (WAZ86_07745) ycbZ 1583975..1585735 (-) 1761 WP_000156518.1 Lon protease family protein -
  WAZ86_RS07750 (WAZ86_07750) matP 1585921..1586373 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WAZ86_RS07755 (WAZ86_07755) ompA 1586449..1587489 (-) 1041 WP_000750416.1 porin OmpA -
  WAZ86_RS07760 (WAZ86_07760) sulA 1587846..1588355 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  WAZ86_RS07765 (WAZ86_07765) sxy/tfoX 1588574..1589203 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ86_RS07770 (WAZ86_07770) yccS 1589166..1591328 (-) 2163 WP_000875061.1 YccS family putative transporter -
  WAZ86_RS07775 (WAZ86_07775) yccF 1591338..1591784 (-) 447 WP_106485782.1 YccF domain-containing protein -
  WAZ86_RS07780 (WAZ86_07780) helD 1591907..1593961 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=858724 WAZ86_RS07765 WP_000839153.1 1588574..1589203(+) (sxy/tfoX) [Escherichia coli strain KTa005]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858724 WAZ86_RS07765 WP_000839153.1 1588574..1589203(+) (sxy/tfoX) [Escherichia coli strain KTa005]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1