Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ89_RS15830 Genome accession   NZ_CP147083
Coordinates   3046752..3047381 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain JSWP006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3041752..3052381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ89_RS15810 (WAZ89_15810) ycbZ 3042140..3043900 (-) 1761 WP_001586869.1 Lon protease family protein -
  WAZ89_RS15815 (WAZ89_15815) matP 3044086..3044538 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WAZ89_RS15820 (WAZ89_15820) ompA 3044615..3045667 (-) 1053 WP_001305912.1 porin OmpA -
  WAZ89_RS15825 (WAZ89_15825) sulA 3046024..3046533 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WAZ89_RS15830 (WAZ89_15830) sxy/tfoX 3046752..3047381 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ89_RS15835 (WAZ89_15835) yccS 3047344..3049506 (-) 2163 WP_000875037.1 YccS family putative transporter -
  WAZ89_RS15840 (WAZ89_15840) yccF 3049516..3049962 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WAZ89_RS15845 (WAZ89_15845) helD 3050085..3052139 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=858674 WAZ89_RS15830 WP_000839153.1 3046752..3047381(+) (sxy/tfoX) [Escherichia coli strain JSWP006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858674 WAZ89_RS15830 WP_000839153.1 3046752..3047381(+) (sxy/tfoX) [Escherichia coli strain JSWP006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1