Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q2310_RS12145 Genome accession   NZ_CP130491
Coordinates   2342225..2342503 (+) Length   92 a.a.
NCBI ID   WP_061113828.1    Uniprot ID   -
Organism   Bacillus cereus strain T     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2337225..2347503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2310_RS12125 (Q2310_12095) - 2338032..2338634 (+) 603 WP_016512837.1 hypothetical protein -
  Q2310_RS12130 (Q2310_12100) - 2338923..2340104 (+) 1182 WP_044306587.1 agmatine/peptidylarginine deiminase -
  Q2310_RS12135 (Q2310_12105) - 2340578..2340829 (-) 252 WP_044306588.1 response regulator transcription factor -
  Q2310_RS12140 (Q2310_12110) - 2341206..2342084 (+) 879 WP_000397972.1 helix-turn-helix domain-containing protein -
  Q2310_RS12145 (Q2310_12115) abrB 2342225..2342503 (+) 279 WP_061113828.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q2310_RS12150 (Q2310_12120) - 2343029..2344279 (+) 1251 WP_044306589.1 hypothetical protein -
  Q2310_RS12155 (Q2310_12125) - 2344347..2345105 (+) 759 WP_044306590.1 TSUP family transporter -
  Q2310_RS12160 (Q2310_12130) - 2345359..2346018 (+) 660 WP_044306591.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10394.32 Da        Isoelectric Point: 10.0092

>NTDB_id=858645 Q2310_RS12145 WP_061113828.1 2342225..2342503(+) (abrB) [Bacillus cereus strain T]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSLRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=858645 Q2310_RS12145 WP_061113828.1 2342225..2342503(+) (abrB) [Bacillus cereus strain T]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACTAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489