Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q3V95_RS06620 Genome accession   NZ_CP130490
Coordinates   1397923..1399284 (+) Length   453 a.a.
NCBI ID   WP_302892024.1    Uniprot ID   -
Organism   Advenella alkanexedens strain TB2-1C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392923..1404284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V95_RS06600 (Q3V95_06600) hpnD 1394123..1394995 (-) 873 WP_169295041.1 presqualene diphosphate synthase HpnD -
  Q3V95_RS06605 (Q3V95_06605) hpnC 1395000..1395833 (-) 834 WP_169295040.1 squalene synthase HpnC -
  Q3V95_RS06610 (Q3V95_06610) alr 1395933..1397081 (+) 1149 WP_169295039.1 alanine racemase -
  Q3V95_RS06615 (Q3V95_06615) - 1397135..1397842 (+) 708 WP_169295038.1 SDR family oxidoreductase -
  Q3V95_RS06620 (Q3V95_06620) radA 1397923..1399284 (+) 1362 WP_302892024.1 DNA repair protein RadA Machinery gene
  Q3V95_RS06625 (Q3V95_06625) - 1399306..1400079 (+) 774 WP_302892025.1 sulfite exporter TauE/SafE family protein -
  Q3V95_RS06630 (Q3V95_06630) - 1400099..1402597 (+) 2499 WP_302892026.1 ABC transporter permease -
  Q3V95_RS06635 (Q3V95_06635) - 1402598..1403017 (+) 420 WP_169295035.1 group II truncated hemoglobin -
  Q3V95_RS06640 (Q3V95_06640) - 1403010..1403735 (+) 726 WP_169295034.1 3-deoxy-D-manno-octulosonic acid kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48389.88 Da        Isoelectric Point: 7.4623

>NTDB_id=858615 Q3V95_RS06620 WP_302892024.1 1397923..1399284(+) (radA) [Advenella alkanexedens strain TB2-1C1]
MAKAKTVYVCQECGGISSKWQGKCTHCGAWNTLQETMEQPVPAAGANRFSHLASSAPVRMLSDIEVRETPRQPTGLAEFD
RVLGGGLVPGSVVLIGGDPGIGKSTLLLQALAMLSQAVPVLYVTGEESAEQVALRAQRLDLDASNVKLLAEIQLETIQRA
LQDEKPQVAVIDSIQTLFSGALSAAPGSVSQVRECAAQLTRLAKQTGVSIVMIGHVTKDGTLAGPRVLEHIVDTVLYFEG
EHHSSYRLIRAFKNRFGAVNELGVFAMTDKGLKGVNNPSALFLSQHAANVPGTCVMATQEGSRPLLVEIQALVDTAHVPN
PRRLSLGLDGGRLAMLLAVLNRHAQVATFDQDVFVNAVGGVRITETASDLAVLLAIISSLRNKPLPQGLLVFGEVGLAGE
IRPATRGQERLKEAAKLGFSIALIPKHNAPRQAIEGLEIWPVSRLDEVLQFIK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=858615 Q3V95_RS06620 WP_302892024.1 1397923..1399284(+) (radA) [Advenella alkanexedens strain TB2-1C1]
ATGGCAAAAGCAAAAACAGTGTATGTCTGCCAGGAATGCGGTGGCATCAGCAGTAAATGGCAGGGCAAGTGTACGCACTG
TGGTGCCTGGAATACCTTGCAGGAAACCATGGAACAGCCCGTGCCTGCAGCGGGAGCCAACCGGTTTTCACACCTGGCTT
CATCGGCGCCGGTACGGATGCTGTCTGACATTGAGGTGCGGGAAACTCCCCGGCAACCTACTGGTCTGGCAGAGTTTGAC
AGGGTTCTGGGTGGTGGCCTGGTGCCGGGGTCGGTGGTCCTTATTGGCGGAGATCCCGGGATTGGCAAATCCACGCTCTT
GTTGCAGGCGCTGGCCATGTTGTCTCAGGCCGTTCCCGTGCTGTATGTAACCGGTGAAGAGTCTGCGGAACAGGTCGCTT
TAAGGGCGCAACGGCTGGATCTTGATGCCAGCAATGTCAAGTTGCTGGCGGAAATCCAGCTTGAAACCATTCAACGGGCC
CTGCAGGATGAAAAGCCCCAGGTGGCCGTGATTGACTCCATTCAAACCTTGTTTTCAGGGGCGTTAAGCGCTGCGCCCGG
TTCGGTATCGCAGGTGCGTGAATGTGCCGCACAGCTTACCCGACTGGCCAAGCAAACCGGTGTCTCCATTGTCATGATCG
GACACGTGACCAAAGATGGTACGCTGGCAGGTCCCCGGGTCTTGGAACACATCGTTGATACGGTTTTGTATTTTGAGGGT
GAACATCATTCTTCTTATCGGCTGATTAGGGCTTTCAAGAACCGGTTTGGTGCCGTTAACGAACTGGGTGTATTCGCCAT
GACCGATAAAGGGCTCAAAGGCGTCAATAATCCTTCGGCCCTTTTCCTTTCCCAGCATGCTGCCAATGTGCCCGGCACGT
GCGTGATGGCCACCCAGGAAGGCAGCCGGCCCTTGCTGGTGGAAATACAGGCGCTGGTGGATACCGCCCATGTTCCCAAT
CCGCGTCGTTTGTCGTTGGGGCTGGATGGTGGCAGGCTGGCCATGTTGTTGGCCGTGCTTAACCGGCATGCCCAGGTGGC
CACGTTTGACCAGGACGTTTTTGTCAATGCGGTGGGTGGGGTAAGAATTACCGAAACGGCATCTGACCTGGCCGTATTGC
TGGCGATTATTTCCTCACTCAGGAACAAGCCTTTGCCACAAGGCTTGCTGGTTTTTGGTGAAGTGGGGCTGGCTGGTGAG
ATTCGCCCTGCCACCCGCGGGCAGGAACGCCTCAAGGAGGCCGCCAAGTTGGGCTTCAGTATTGCGCTGATACCCAAACA
TAATGCACCCAGGCAGGCAATCGAAGGGCTGGAAATCTGGCCTGTTTCCCGTCTTGATGAAGTGTTGCAGTTTATAAAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(369-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.246

100

0.486
  radA Streptococcus mitis NCTC 12261

46.389

100

0.468
  radA Streptococcus pneumoniae Rx1

46.389

100

0.468
  radA Streptococcus pneumoniae D39

46.389

100

0.468
  radA Streptococcus pneumoniae R6

46.389

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.389

100

0.468
  radA Streptococcus mitis SK321

48.14

94.923

0.457