Detailed information NTG0858612

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Q3V95_RS04365
• Genome accession: NZ_CP130490
• Coordinates: 923543..924892 (+)
• Length: 449 a.a.
• NCBI ID: WP_302891766.1
• Uniprot ID: -
• Organism: Advenella alkanexedens strain TB2-1C1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 918543..929892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3V95_RS04345 (Q3V95_04345)	-	921234..921584 (+)	351	WP_302891765.1	hypothetical protein	-
Q3V95_RS04350 (Q3V95_04350)	-	921657..921902 (-)	246	WP_169295455.1	YfhL family 4Fe-4S dicluster ferredoxin	-
Q3V95_RS04355 (Q3V95_04355)	coaD	922181..922690 (-)	510	WP_169295454.1	pantetheine-phosphate adenylyltransferase	-
Q3V95_RS04360 (Q3V95_04360)	rsmD	922733..923320 (-)	588	WP_169295453.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
Q3V95_RS04365 (Q3V95_04365)	pilA	923543..924892 (+)	1350	WP_302891766.1	signal recognition particle-docking protein FtsY	Machinery gene
Q3V95_RS04370 (Q3V95_04370)	-	925074..926783 (-)	1710	WP_302891767.1	CYTH and CHAD domain-containing protein	-
Q3V95_RS04375 (Q3V95_04375)	glpD	926873..928411 (-)	1539	WP_302891768.1	glycerol-3-phosphate dehydrogenase	-
Q3V95_RS04380 (Q3V95_04380)	-	928464..928946 (-)	483	WP_302891769.1	MarR family winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 47688.80 Da
• Isoelectric Point: 4.7587

>NTDB_id=858612 Q3V95_RS04365 WP_302891766.1 923543..924892(+) (pilA) [Advenella alkanexedens strain TB2-1C1]
MFSFFRKKKQPKPQDHKDQESLVEQTARGDEAESPTANDQASVSEAVQNAPVLPEHTPAPVQVNEQARSDQDAMLLGQGQ
DIEHAQIPEQQSSQPVFEQSEPGAPLASPATSDPEPVLSSLPEPEPEPEPEPEPEPEPEPAPAPEKKSWLSRLKQGLSRT
GSSISSIFVGVKVDENLFEELETALIMADSGMEATESLLKALRAKVRKERIDDAAKVKAALKELLTEHLKPLEKDFNLKR
ASPLVVMIAGVNGAGKTTSIGKLAHHFQVQGASVLLAAGDTFRAAAREQLIEWGSRNNVAVIAQDGGDPAAVAFDAVNAG
KARNASVVMVDTAGRLPTQLHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNAISQIKAFDAALDLTGLIVTKLDGT
AKGGTLAAVAAGSHGVRPIPVYWIGVGESLHDLQPFVASEFAGALLGEG

Nucleotide

• Length: 1350 bp

>NTDB_id=858612 Q3V95_RS04365 WP_302891766.1 923543..924892(+) (pilA) [Advenella alkanexedens strain TB2-1C1]
ATGTTCAGTTTCTTCAGGAAAAAAAAGCAACCCAAGCCGCAGGATCATAAAGACCAGGAAAGTCTTGTTGAGCAGACGGC
ACGTGGTGATGAGGCAGAAAGCCCGACGGCCAATGATCAGGCTTCTGTTTCAGAGGCTGTTCAGAATGCTCCCGTGTTGC
CCGAACACACACCAGCGCCTGTTCAGGTAAATGAACAGGCCAGATCGGATCAGGATGCCATGCTTTTGGGGCAGGGCCAG
GATATAGAGCATGCACAAATACCCGAGCAGCAGTCCAGTCAGCCTGTTTTTGAACAATCTGAACCTGGCGCACCCTTGGC
ATCACCGGCCACAAGCGATCCAGAACCGGTGCTATCCTCTTTGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGC
CAGAGCCAGAGCCAGAGCCCGCCCCGGCCCCTGAAAAGAAATCATGGCTTTCGCGTCTTAAACAGGGCCTGTCCAGAACC
GGATCCAGCATCAGTTCCATTTTTGTGGGTGTCAAGGTTGATGAAAACCTGTTTGAAGAGCTTGAAACGGCACTGATCAT
GGCTGATTCGGGTATGGAAGCCACGGAATCACTACTTAAAGCTTTGCGCGCCAAGGTCAGGAAAGAGCGGATTGATGATG
CCGCAAAAGTGAAAGCCGCCTTGAAAGAACTGTTGACCGAGCACCTTAAACCGCTGGAAAAAGATTTTAATCTGAAGCGT
GCTTCTCCGTTGGTGGTCATGATCGCAGGCGTGAATGGTGCCGGTAAAACCACATCTATTGGCAAACTGGCCCATCATTT
TCAGGTCCAGGGCGCCAGCGTTCTGCTGGCTGCAGGTGACACTTTCAGGGCAGCTGCCCGCGAGCAACTGATTGAATGGG
GTTCGCGCAACAATGTGGCCGTTATTGCCCAGGATGGCGGTGACCCTGCCGCAGTTGCCTTTGATGCCGTCAATGCCGGC
AAGGCGCGTAATGCATCAGTGGTCATGGTTGATACCGCCGGACGTTTGCCCACCCAGCTTCATTTAATGGAAGAACTGAA
AAAAATCAGGCGTGTGATTGGCAAGGCGGATGCTTCCGCACCGCATGAAGTGTTGCTGGTGGTGGATGGTAATACGGGTC
AGAATGCCATTTCCCAAATCAAAGCTTTTGACGCGGCCCTGGATTTAACCGGTCTTATCGTGACCAAACTGGATGGTACG
GCCAAAGGTGGTACGCTGGCAGCCGTTGCCGCAGGCAGTCATGGTGTACGCCCGATTCCGGTTTATTGGATTGGTGTGGG
TGAATCCCTGCATGATCTGCAGCCGTTTGTTGCTTCGGAATTTGCCGGTGCACTGCTCGGAGAAGGCTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (244-446)

• SRP54-type protein, helical bundle domain (SRP54_N) (161-223)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.23	100	0.486