Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q2T90_RS07870 Genome accession   NZ_CP130489
Coordinates   1614358..1615722 (+) Length   454 a.a.
NCBI ID   WP_107505705.1    Uniprot ID   A0A2T4KS25
Organism   Staphylococcus devriesei strain GYZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609358..1620722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS07850 (Q2T90_07850) - 1609606..1610067 (+) 462 WP_103166451.1 CtsR family transcriptional regulator -
  Q2T90_RS07855 (Q2T90_07855) - 1610092..1610655 (+) 564 WP_302885560.1 UvrB/UvrC motif-containing protein -
  Q2T90_RS07860 (Q2T90_07860) - 1610648..1611655 (+) 1008 WP_103166449.1 protein arginine kinase -
  Q2T90_RS07865 (Q2T90_07865) - 1611671..1614145 (+) 2475 WP_103166448.1 ATP-dependent Clp protease ATP-binding subunit -
  Q2T90_RS07870 (Q2T90_07870) radA 1614358..1615722 (+) 1365 WP_107505705.1 DNA repair protein RadA Machinery gene
  Q2T90_RS07875 (Q2T90_07875) - 1615749..1616816 (+) 1068 WP_107505706.1 PIN/TRAM domain-containing protein -
  Q2T90_RS07880 (Q2T90_07880) gltX 1617190..1618644 (+) 1455 WP_103166445.1 glutamate--tRNA ligase -
  Q2T90_RS07885 (Q2T90_07885) cysE 1619056..1619697 (+) 642 WP_103166444.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49922.22 Da        Isoelectric Point: 6.8241

>NTDB_id=858600 Q2T90_RS07870 WP_107505705.1 1614358..1615722(+) (radA) [Staphylococcus devriesei strain GYZ2]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKASNPKHGVKAKESSAKVQKLNSIKHEATPRVQTESTEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRAERLEEDSSNLNVLAETDLEVIHQTVQ
QEQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVVIPQTNIGGWTFPEGIRVVGVSTVHEALKYAFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=858600 Q2T90_RS07870 WP_107505705.1 1614358..1615722(+) (radA) [Staphylococcus devriesei strain GYZ2]
TTGGCCAAAAAGAAAGTGATTTTCGAATGTATGGCTTGTGGCTACCAATCTCCAAAGTGGATGGGTAAATGTCCGAATTG
TGGCGCATGGAACCAAATGGAGGAAATTGTAGAGAAAGCTTCAAATCCTAAACATGGCGTGAAGGCGAAAGAGTCGAGCG
CAAAAGTACAAAAATTAAACAGTATTAAGCATGAAGCAACTCCAAGAGTACAAACAGAATCGACAGAATTTAACCGCGTA
TTAGGCGGAGGAATTGTTAGTGGATCTTTAGTGTTAATCGGCGGGGACCCAGGAATTGGGAAATCGACGTTGTTACTACA
AATTTGCGCGTCATTATCACAAAAGTTGAACGTTTTATATATAACAGGTGAAGAATCACTCAATCAGACTAAATTACGTG
CTGAGCGTTTAGAAGAAGATTCAAGTAATTTAAATGTATTAGCTGAAACAGATTTGGAAGTCATTCATCAGACCGTTCAA
CAAGAACAACCCGACATATTAGTCGTGGATTCTATTCAAACTATTTATCACCCTGAGATTAGTTCGGCACCCGGTTCAGT
ATCACAAGTTCGAGAAAGTACACAGAGCTTGATGAATATTGCTAAACAAATGAATATTGCAACTTTTATTGTCGGACACG
TAACGAAAGAAGGCCAAATTGCTGGGCCACGTTTATTAGAACATATGGTAGATACGGTATTATATTTTGAAGGTGATGAA
CACCATGCTTACCGAATTTTAAGAGCGGTTAAAAACCGTTTTGGTTCAACTAACGAGATGGGCATTTTTGAAATGAAACA
AAGTGGTTTAAAGGGTGTCCAAAATCCGTCTGAAATGTTTTTAGAAGAACGTTCGACCAATGTGCCTGGTTCGACAATTG
TGGCGACTATGGAAGGTACCCGTCCGTTACTTATTGAAGTACAGTCATTAGTAACACCAACTACCTTTAACAACCCTCGA
CGCATGGCCACAGGTATTGACCATAATCGGTTGAGTTTATTAATGGCAGTTCTAGAGAAGAAAGAGAATTATTTACTTCA
ACAACAAGATGCTTACATTAAAGTGGCTGGTGGTGTGCGATTGACTGAACCGGCAGTTGATTTAAGTATCATTGTGGCAA
CAGCTTCTAGCTTTAAAGATAAAGCGGTAGATGGCTTAGATTGTTATATCGGTGAAGTTGGCTTAACGGGAGAAGTGAGA
CGTGTATCCCGTATTGAACAACGCGTTCAAGAGGCCGCTAAGTTAGGATTTGAAAGAGTGGTTATTCCACAAACTAATAT
CGGAGGATGGACGTTTCCTGAAGGTATTCGCGTAGTAGGTGTGTCTACCGTTCATGAAGCGCTTAAATATGCGTTTAAAT
CTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4KS25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.646

100

0.661
  radA Streptococcus pneumoniae Rx1

60.177

99.559

0.599
  radA Streptococcus pneumoniae D39

60.177

99.559

0.599
  radA Streptococcus pneumoniae R6

60.177

99.559

0.599
  radA Streptococcus pneumoniae TIGR4

60.177

99.559

0.599
  radA Streptococcus mitis NCTC 12261

60.177

99.559

0.599
  radA Streptococcus mitis SK321

60.177

99.559

0.599