Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   Q2T90_RS02935 Genome accession   NZ_CP130489
Coordinates   570148..570864 (+) Length   238 a.a.
NCBI ID   WP_103165880.1    Uniprot ID   A0A2K4DS32
Organism   Staphylococcus devriesei strain GYZ2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 565148..575864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS02910 (Q2T90_02910) - 565827..566450 (+) 624 WP_103167087.1 nitroreductase family protein -
  Q2T90_RS02915 (Q2T90_02915) - 566588..567373 (+) 786 WP_107506042.1 carbon-nitrogen family hydrolase -
  Q2T90_RS02920 (Q2T90_02920) - 568110..568676 (+) 567 WP_103165877.1 accessory gene regulator AgrB -
  Q2T90_RS02925 (Q2T90_02925) agrD 568679..568819 (+) 141 WP_103165878.1 cyclic lactone autoinducer peptide AgrD -
  Q2T90_RS02930 (Q2T90_02930) agrC 568846..570135 (+) 1290 WP_103165879.1 quorum-sensing sensor histidine kinase AgrC -
  Q2T90_RS02935 (Q2T90_02935) agrA 570148..570864 (+) 717 WP_103165880.1 quorum-sensing response regulator AgrA Regulator
  Q2T90_RS02940 (Q2T90_02940) - 570914..571879 (-) 966 WP_103165881.1 carbohydrate kinase -
  Q2T90_RS02945 (Q2T90_02945) - 571880..573367 (-) 1488 WP_103165882.1 sucrose-6-phosphate hydrolase -
  Q2T90_RS02950 (Q2T90_02950) - 573468..574418 (-) 951 WP_107506038.1 LacI family DNA-binding transcriptional regulator -
  Q2T90_RS02955 (Q2T90_02955) - 574524..575768 (-) 1245 WP_107506039.1 ammonium transporter -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27847.77 Da        Isoelectric Point: 5.2266

>NTDB_id=858587 Q2T90_RS02935 WP_103165880.1 570148..570864(+) (agrA) [Staphylococcus devriesei strain GYZ2]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEKSKETNDVGCYFLDIQLEADMNGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFIYKVSAMDFIFKDDPDQLKSRIIDCLETAHTRLKLLSKESTIETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVVNRHNIESIDSKERVVNFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=858587 Q2T90_RS02935 WP_103165880.1 570148..570864(+) (agrA) [Staphylococcus devriesei strain GYZ2]
TTGAAAATATTCATTTGTGAAGATGATGTTAAACAACGTGAAAATATGGTTTCAATTATTAATAATTACATAATGATTGA
AGAGAAACCTATGGAAATCGCATTAGCTACAGACGATCCTTATGAAATTATCGAAAAGTCTAAAGAAACGAACGATGTAG
GCTGTTACTTTTTAGATATTCAATTAGAAGCAGATATGAATGGAATCAAATTGGGTAGCGAGATACGTAAGTATGACCCT
ATCGGAAACATTATATTTGTGACTAGTCACAGTGAACTAACATATTTAACGTTTATTTATAAGGTATCAGCAATGGACTT
TATTTTTAAAGATGACCCTGATCAATTAAAATCAAGAATTATTGATTGTTTAGAAACGGCGCATACACGTTTGAAATTAT
TATCTAAAGAAAGTACGATTGAAACTATCGAATTAAAACGTGGTAGTAATTCCATTTATGTACAATATGATGATGTGATG
TTTTTCGAATCATCGTCTAAATCTCATCGTCTCATTGCGCATCTTGATAATCGTCAAATCGAGTTCTACGGTAATCTTAA
AGAATTAGCGCAATTAGATGAGCGCTTCTTTAGATGTCATAATAGTTTTGTAGTTAACCGACACAATATAGAATCGATTG
ATTCTAAAGAACGTGTAGTTAATTTCAAAAATGGCGAACACTGTTATGCTTCAGTTCGTAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4DS32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.294

100

0.853