Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   Q3A90_RS09700 Genome accession   NZ_CP130477
Coordinates   1848633..1849049 (-) Length   138 a.a.
NCBI ID   WP_181170505.1    Uniprot ID   -
Organism   Priestia megaterium strain S1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1843633..1854049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A90_RS09675 (Q3A90_09675) - 1843645..1844160 (+) 516 WP_116739305.1 enoyl-CoA hydratase/isomerase family protein -
  Q3A90_RS09680 (Q3A90_09680) - 1844301..1844426 (+) 126 WP_014458690.1 hypothetical protein -
  Q3A90_RS09685 (Q3A90_09685) helD 1844670..1846988 (+) 2319 WP_302892895.1 RNA polymerase recycling motor HelD -
  Q3A90_RS09690 (Q3A90_09690) - 1847368..1847958 (+) 591 WP_014458692.1 CPBP family intramembrane glutamic endopeptidase -
  Q3A90_RS09695 (Q3A90_09695) comJ 1848190..1848597 (-) 408 WP_014458693.1 competence protein ComJ -
  Q3A90_RS09700 (Q3A90_09700) nucA/comI 1848633..1849049 (-) 417 WP_181170505.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  Q3A90_RS09705 (Q3A90_09705) - 1849451..1849711 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  Q3A90_RS09710 (Q3A90_09710) - 1849868..1851817 (+) 1950 WP_302892896.1 FUSC family protein -
  Q3A90_RS09715 (Q3A90_09715) - 1851853..1852671 (-) 819 WP_014458697.1 squalene/phytoene synthase family protein -
  Q3A90_RS09720 (Q3A90_09720) - 1852997..1853668 (+) 672 WP_221781005.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15095.72 Da        Isoelectric Point: 4.2601

>NTDB_id=858533 Q3A90_RS09700 WP_181170505.1 1848633..1849049(-) (nucA/comI) [Priestia megaterium strain S1]
MASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGY
PTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 417 bp        

>NTDB_id=858533 Q3A90_RS09700 WP_181170505.1 1848633..1849049(-) (nucA/comI) [Priestia megaterium strain S1]
ATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGA
AGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAACCGGCGATCATATTCGCGACGCAA
TTGCCGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAATCGAGAAGAATCGCTAAAAGGATAC
CCAACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGGCGGAGCAGGAGCTGATATTCGCTA
TATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAACAGTACCCAGATGGTACACGCGTAC
AATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

91.304

0.594