Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ93_RS07145 Genome accession   NZ_CP147069
Coordinates   1491219..1491848 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain JKHS004     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486219..1496848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ93_RS07125 (WAZ93_07125) ycbZ 1486608..1488368 (-) 1761 WP_000156526.1 Lon protease family protein -
  WAZ93_RS07130 (WAZ93_07130) matP 1488554..1489006 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  WAZ93_RS07135 (WAZ93_07135) ompA 1489082..1490134 (-) 1053 WP_000750419.1 porin OmpA -
  WAZ93_RS07140 (WAZ93_07140) sulA 1490491..1491000 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WAZ93_RS07145 (WAZ93_07145) sxy/tfoX 1491219..1491848 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ93_RS07150 (WAZ93_07150) yccS 1491811..1493973 (-) 2163 WP_000875023.1 YccS family putative transporter -
  WAZ93_RS07155 (WAZ93_07155) yccF 1493983..1494429 (-) 447 WP_001261231.1 YccF domain-containing protein -
  WAZ93_RS07160 (WAZ93_07160) helD 1494552..1496606 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=858475 WAZ93_RS07145 WP_000839153.1 1491219..1491848(+) (sxy/tfoX) [Escherichia coli strain JKHS004]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858475 WAZ93_RS07145 WP_000839153.1 1491219..1491848(+) (sxy/tfoX) [Escherichia coli strain JKHS004]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1