Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   Q3O39_RS12335 Genome accession   NZ_CP130475
Coordinates   2558594..2559190 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM126726     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553594..2564190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O39_RS12310 (Q3O39_12310) mobB 2553967..2554488 (-) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  Q3O39_RS12315 (Q3O39_12315) glp 2554449..2555741 (-) 1293 WP_032874748.1 gephyrin-like molybdotransferase Glp -
  Q3O39_RS12320 (Q3O39_12320) - 2555759..2556778 (-) 1020 WP_032874747.1 molybdopterin-synthase adenylyltransferase MoeB -
  Q3O39_RS12325 (Q3O39_12325) - 2556830..2557432 (-) 603 WP_032874745.1 molybdenum cofactor guanylyltransferase -
  Q3O39_RS12330 (Q3O39_12330) - 2557578..2558570 (+) 993 WP_032874743.1 hypothetical protein -
  Q3O39_RS12335 (Q3O39_12335) rok 2558594..2559190 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  Q3O39_RS12340 (Q3O39_12340) - 2559643..2560101 (-) 459 WP_032874741.1 TlpA disulfide reductase family protein -
  Q3O39_RS12345 (Q3O39_12345) - 2560390..2561196 (+) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  Q3O39_RS12350 (Q3O39_12350) - 2561231..2561476 (-) 246 WP_003154596.1 YkuS family protein -
  Q3O39_RS12355 (Q3O39_12355) - 2561537..2562661 (-) 1125 WP_032874737.1 N-acetyldiaminopimelate deacetylase -
  Q3O39_RS12360 (Q3O39_12360) dapD 2562732..2563442 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  Q3O39_RS12365 (Q3O39_12365) - 2563524..2563979 (-) 456 WP_032874735.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=858470 Q3O39_RS12335 WP_003154591.1 2558594..2559190(-) (rok) [Bacillus velezensis strain SRCM126726]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=858470 Q3O39_RS12335 WP_003154591.1 2558594..2559190(-) (rok) [Bacillus velezensis strain SRCM126726]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843