Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   Q3O39_RS02765 Genome accession   NZ_CP130475
Coordinates   540656..541345 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM126726     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535656..546345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O39_RS02740 (Q3O39_02740) degS 535939..537102 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  Q3O39_RS02745 (Q3O39_02745) degU 537179..537868 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q3O39_RS02750 (Q3O39_02750) - 537966..538814 (+) 849 WP_032876160.1 DegV family protein -
  Q3O39_RS02755 (Q3O39_02755) comFA 538923..540308 (+) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  Q3O39_RS02760 (Q3O39_02760) - 540366..540650 (+) 285 WP_003151389.1 competence protein ComFB -
  Q3O39_RS02765 (Q3O39_02765) comFC 540656..541345 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  Q3O39_RS02770 (Q3O39_02770) - 541419..541838 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  Q3O39_RS02775 (Q3O39_02775) flgM 541908..542174 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q3O39_RS02780 (Q3O39_02780) - 542189..542671 (+) 483 WP_032876168.1 flagellar protein FlgN -
  Q3O39_RS02785 (Q3O39_02785) flgK 542687..544204 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  Q3O39_RS02790 (Q3O39_02790) flgL 544216..545133 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  Q3O39_RS02795 (Q3O39_02795) - 545224..545793 (+) 570 WP_007407476.1 DUF6470 family protein -
  Q3O39_RS02800 (Q3O39_02800) fliW 545823..546254 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=858435 Q3O39_RS02765 WP_196770545.1 540656..541345(+) (comFC) [Bacillus velezensis strain SRCM126726]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=858435 Q3O39_RS02765 WP_196770545.1 540656..541345(+) (comFC) [Bacillus velezensis strain SRCM126726]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594