Detailed information NTG0858428

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: Q3O39_RS01790
• Genome accession: NZ_CP130475
• Coordinates: 349359..350504 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SRCM126726
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 344359..355504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3O39_RS01765 (Q3O39_01765)	-	344642..345075 (+)	434	Protein_348	hypothetical protein	-
Q3O39_RS01770 (Q3O39_01770)	-	345100..347172 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
Q3O39_RS01775 (Q3O39_01775)	speE	347372..348202 (+)	831	WP_003151052.1	spermidine synthase	-
Q3O39_RS01780 (Q3O39_01780)	speB	348261..349133 (+)	873	WP_032875884.1	agmatinase	-
Q3O39_RS01785 (Q3O39_01785)	-	349256..349375 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
Q3O39_RS01790 (Q3O39_01790)	rapF	349359..350504 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
Q3O39_RS01795 (Q3O39_01795)	-	350735..352090 (+)	1356	WP_032875887.1	YncE family protein	-
Q3O39_RS01800 (Q3O39_01800)	-	352130..353506 (+)	1377	WP_032875890.1	YncE family protein	-
Q3O39_RS01805 (Q3O39_01805)	-	353513..354025 (-)	513	Protein_356	bacteriocin biosynthesis protein AlbG	-
Q3O39_RS01810 (Q3O39_01810)	-	354179..354607 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=858428 Q3O39_RS01790 WP_074534220.1 349359..350504(-) (rapF) [Bacillus velezensis strain SRCM126726]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=858428 Q3O39_RS01790 WP_074534220.1 349359..350504(-) (rapF) [Bacillus velezensis strain SRCM126726]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541