Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   WAZ85_RS12635 Genome accession   NZ_CP147065
Coordinates   2535883..2536560 (-) Length   225 a.a.
NCBI ID   WP_000178170.1    Uniprot ID   -
Organism   Escherichia coli strain JKHS006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2530883..2541560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ85_RS12620 (WAZ85_12620) chiA 2532241..2534943 (+) 2703 WP_000773180.1 bifunctional chitinase/lysozyme -
  WAZ85_RS12625 (WAZ85_12625) bfd 2535112..2535306 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  WAZ85_RS12630 (WAZ85_12630) bfr 2535378..2535854 (+) 477 WP_000675504.1 bacterioferritin -
  WAZ85_RS12635 (WAZ85_12635) pilD 2535883..2536560 (-) 678 WP_000178170.1 prepilin peptidase GspO Machinery gene
  WAZ85_RS12640 (WAZ85_12640) gspM 2536560..2537021 (-) 462 WP_001296465.1 type II secretion system protein GspM -
  WAZ85_RS12645 (WAZ85_12645) gspL 2537018..2538181 (-) 1164 WP_001296464.1 type II secretion system protein GspL -
  WAZ85_RS12650 (WAZ85_12650) gspK 2538196..2539179 (-) 984 WP_001058509.1 type II secretion system minor pseudopilin GspK -
  WAZ85_RS12655 (WAZ85_12655) gspJ 2539172..2539759 (-) 588 WP_000610632.1 type II secretion system minor pseudopilin GspJ -
  WAZ85_RS12660 (WAZ85_12660) gspI 2539752..2540129 (-) 378 WP_001041749.1 type II secretion system minor pseudopilin GspI -
  WAZ85_RS12665 (WAZ85_12665) gspH 2540126..2540635 (-) 510 WP_001076039.1 type II secretion system minor pseudopilin GspH -
  WAZ85_RS12670 (WAZ85_12670) gspG 2540643..2541080 (-) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24842.69 Da        Isoelectric Point: 7.6364

>NTDB_id=858416 WAZ85_RS12635 WP_000178170.1 2535883..2536560(-) (pilD) [Escherichia coli strain JKHS006]
MTMLLPLFILVGFIAGYFVNAMAYHLSPLEDKTALTFRQVLVHFWQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=858416 WAZ85_RS12635 WP_000178170.1 2535883..2536560(-) (pilD) [Escherichia coli strain JKHS006]
ATGACAATGTTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATGGCCTATCACCTCTC
GCCTTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCTGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGCACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTCTGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTCGCTG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCGTGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGATATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.95

100

0.382