Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   Q3B96_RS02100 Genome accession   NZ_CP130465
Coordinates   362176..362976 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MGMM9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 357176..367976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3B96_RS02080 (Q3B96_02080) - 357598..359901 (-) 2304 WP_035318866.1 NTTRR-F1 domain -
  Q3B96_RS02085 (Q3B96_02085) - 360135..360593 (-) 459 WP_025812048.1 hypothetical protein -
  Q3B96_RS02090 (Q3B96_02090) - 360994..361380 (-) 387 WP_009327922.1 serine O-acetyltransferase -
  Q3B96_RS02095 (Q3B96_02095) - 361507..361803 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  Q3B96_RS02100 (Q3B96_02100) spo0A 362176..362976 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  Q3B96_RS02105 (Q3B96_02105) spoIVB 363266..364549 (-) 1284 WP_011198109.1 SpoIVB peptidase -
  Q3B96_RS02110 (Q3B96_02110) recN 364732..366462 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  Q3B96_RS02115 (Q3B96_02115) argR 366494..366943 (-) 450 WP_003183369.1 transcriptional regulator ArgR -
  Q3B96_RS02120 (Q3B96_02120) - 367109..367954 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=858322 Q3B96_RS02100 WP_003183361.1 362176..362976(-) (spo0A) [Bacillus licheniformis strain MGMM9]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=858322 Q3B96_RS02100 WP_003183361.1 362176..362976(-) (spo0A) [Bacillus licheniformis strain MGMM9]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925