Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ54_RS19260 Genome accession   NZ_CP147056
Coordinates   3901188..3901817 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain 1002W03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3896188..3906817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ54_RS19240 (WAZ54_19245) ycbZ 3896578..3898338 (-) 1761 WP_000156501.1 Lon protease family protein -
  WAZ54_RS19245 (WAZ54_19250) matP 3898524..3898976 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  WAZ54_RS19250 (WAZ54_19255) ompA 3899052..3900104 (-) 1053 WP_001346420.1 porin OmpA -
  WAZ54_RS19255 (WAZ54_19260) sulA 3900460..3900969 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  WAZ54_RS19260 (WAZ54_19265) sxy/tfoX 3901188..3901817 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ54_RS19265 (WAZ54_19270) yccS 3901780..3903942 (-) 2163 WP_000875042.1 YccS family putative transporter -
  WAZ54_RS19270 (WAZ54_19275) yccF 3903952..3904398 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WAZ54_RS19275 (WAZ54_19280) helD 3904521..3906575 (+) 2055 WP_001385262.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=858283 WAZ54_RS19260 WP_000839151.1 3901188..3901817(+) (sxy/tfoX) [Escherichia coli strain 1002W03]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858283 WAZ54_RS19260 WP_000839151.1 3901188..3901817(+) (sxy/tfoX) [Escherichia coli strain 1002W03]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995