Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   WAZ54_RS10985 Genome accession   NZ_CP147056
Coordinates   2142659..2144488 (+) Length   609 a.a.
NCBI ID   WP_000035582.1    Uniprot ID   -
Organism   Escherichia coli strain 1002W03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2137659..2149488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ54_RS10950 (WAZ54_10955) ysgD 2138020..2138076 (+) 57 WP_211180520.1 protein YsgD -
  WAZ54_RS10955 (WAZ54_10960) corA 2138228..2139178 (+) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  WAZ54_RS10960 (WAZ54_10965) - 2139221..2139601 (-) 381 Protein_1982 DUF2628 domain-containing protein -
  WAZ54_RS10965 (WAZ54_10970) - 2139616..2139996 (-) 381 WP_021536641.1 hypothetical protein -
  WAZ54_RS10970 (WAZ54_10975) rarD 2140091..2140981 (-) 891 WP_000339102.1 EamA family transporter RarD -
  WAZ54_RS10975 (WAZ54_10980) yigI 2141033..2141500 (-) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  WAZ54_RS10980 (WAZ54_10985) pldA 2141665..2142534 (+) 870 WP_001259692.1 phospholipase A -
  WAZ54_RS10985 (WAZ54_10990) recQ 2142659..2144488 (+) 1830 WP_000035582.1 ATP-dependent DNA helicase RecQ Machinery gene
  WAZ54_RS10990 (WAZ54_10995) rhtC 2144553..2145173 (+) 621 WP_000928839.1 threonine export protein RhtC -
  WAZ54_RS10995 (WAZ54_11000) - 2145211..2146071 (-) 861 WP_000133649.1 Rpn family recombination-promoting nuclease/putative transposase -
  WAZ54_RS11000 (WAZ54_11005) rhtB 2146230..2146850 (-) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  WAZ54_RS11005 (WAZ54_11010) pldB 2146961..2147983 (+) 1023 WP_000487669.1 lysophospholipase L2 -
  WAZ54_RS11010 (WAZ54_11015) yigL 2147991..2148791 (+) 801 WP_000285366.1 sugar/pyridoxal phosphate phosphatase YigL -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68329.41 Da        Isoelectric Point: 7.2638

>NTDB_id=858253 WAZ54_RS10985 WP_000035582.1 2142659..2144488(+) (recQ) [Escherichia coli strain 1002W03]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDSLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFIALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=858253 WAZ54_RS10985 WP_000035582.1 2142659..2144488(+) (recQ) [Escherichia coli strain 1002W03]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGGGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAGATTATCGACACCGTACTTTCCGGTCGCGATAGCCTGGTCGTCATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATCCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTCTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTAGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAACTTGAAGT
GATGACAGGCTGTCGCACCGGGCAAATCCGCCTGCTTTATATCGCGCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGTCACGATTTCCGCCCG
GAATACGCTGCCCTCGGTCAGCTGCGTCAGCGTTTTCCGACGCTGCCGTTTATAGCGCTGACTGCCACAGCCGATGACAC
CACGCGCCAGGATATCGTGCGCCTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAATTCAAACCGCTCGATCAGTTGATGCGTTATGTACAGGAACAACGCGGTAAGTCGGGGATT
ATTTACTGTAATAGTCGTGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATGTTCGCGCTGATGTGCAGGAAAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAACAAGCCTAACGTTCGCTTCGTGGTGCATTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACTGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAACGTCATAAACTCAATGCGATGGGCGCGT
TTGCTGAAGCGCAAACTTGCCGTCGTTTGGTATTGCTGAACTATTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCAAAACAGTACGATGGTTCAACCGATGCGCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGCGGTGCTAATAATCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCTGCGCGTCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGCAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCTACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGTATGCGCAA
GCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGTGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(28-187)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

HRDC domain (HRDC)

(533-599)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

97.209

0.391