Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   WAZ54_RS06400 Genome accession   NZ_CP147056
Coordinates   1197405..1198646 (+) Length   413 a.a.
NCBI ID   WP_001161851.1    Uniprot ID   -
Organism   Escherichia coli strain 1002W03     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192405..1203646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ54_RS06385 (WAZ54_06390) - 1192920..1194596 (+) 1677 WP_001385481.1 polysaccharide biosynthesis/export family protein -
  WAZ54_RS06390 (WAZ54_06395) kdsB 1194606..1195346 (+) 741 WP_001312097.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WAZ54_RS06395 (WAZ54_06400) - 1195343..1197370 (+) 2028 WP_000579528.1 capsular polysaccharide biosynthesis protein -
  WAZ54_RS06400 (WAZ54_06405) kpsS 1197405..1198646 (+) 1242 WP_001161851.1 capsular biosynthesis protein Regulator
  WAZ54_RS06405 (WAZ54_06410) - 1198767..1200107 (-) 1341 WP_021536598.1 glycosyltransferase family A protein -
  WAZ54_RS06410 (WAZ54_06415) - 1200236..1201405 (-) 1170 WP_000685104.1 nucleotide sugar dehydrogenase -
  WAZ54_RS06415 (WAZ54_06420) - 1201494..1202225 (-) 732 WP_000584102.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 49246.12 Da        Isoelectric Point: 10.1882

>NTDB_id=858227 WAZ54_RS06400 WP_001161851.1 1197405..1198646(+) (kpsS) [Escherichia coli strain 1002W03]
MQGNALTVLLSGKKYLLLQGPMGPFFRDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGEMIFNKIKKD
KKDCIMLSKKTSQ

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=858227 WAZ54_RS06400 WP_001161851.1 1197405..1198646(+) (kpsS) [Escherichia coli strain 1002W03]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTACAGGGGCCAATGGGACCCTTTTTCAG
AGATGTTGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGTGGTGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCCTACTACCAAACGCCGAAAGAGTTTCCTGGTTGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTCCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGTCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCATGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCAGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGTTGATTCATAATAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACCCAGGTTAATGCGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAAAAAGAT
AAAAAAGATTGTATTATGCTATCAAAAAAAACATCACAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.394

95.884

0.378