Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I0P84_RS14205 Genome accession   NZ_AP024524
Coordinates   2973954..2974280 (-) Length   108 a.a.
NCBI ID   WP_125279773.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2968954..2979280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS14185 (RYU24_28110) - 2969157..2969816 (-) 660 WP_005232536.1 FHA domain-containing protein -
  I0P84_RS14190 (RYU24_28120) gspD 2969879..2972128 (-) 2250 WP_125279770.1 type II secretion system secretin GspD -
  I0P84_RS14195 (RYU24_28130) - 2972167..2973024 (-) 858 WP_125279771.1 type II secretion system protein N -
  I0P84_RS14200 (RYU24_28140) gspN 2973024..2973767 (-) 744 WP_125279772.1 type II secretion system protein N -
  I0P84_RS14205 (RYU24_28150) hns 2973954..2974280 (-) 327 WP_125279773.1 H-NS family nucleoid-associated regulatory protein Regulator
  I0P84_RS14210 (RYU24_28160) - 2974433..2974858 (-) 426 WP_004781650.1 acyl-CoA thioesterase -
  I0P84_RS14215 (RYU24_28170) - 2974866..2976059 (-) 1194 WP_214001679.1 heme biosynthesis protein HemY -
  I0P84_RS14220 (RYU24_28180) - 2976066..2976905 (-) 840 WP_214001680.1 hypothetical protein -
  I0P84_RS14225 (RYU24_28190) - 2976913..2977680 (-) 768 WP_214001681.1 uroporphyrinogen-III synthase -
  I0P84_RS14230 (RYU24_28200) hemC 2977680..2978603 (-) 924 WP_180031052.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12381.19 Da        Isoelectric Point: 7.0205

>NTDB_id=85821 I0P84_RS14205 WP_125279773.1 2973954..2974280(-) (hns) [Acinetobacter variabilis strain RYU24]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIENAYHQVLEIADKVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=85821 I0P84_RS14205 WP_125279773.1 2973954..2974280(-) (hns) [Acinetobacter variabilis strain RYU24]
ATGATGCCGGACATTACAAATTTATCAGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAAATGCTTATCATCAGGTATTGGAGATTGCCGATAAGGTAGGCTTAACGATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACTTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAGGGCGCAAAACTGGAAGATTTTGT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778

Multiple sequence alignment