Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q3O83_RS08115 Genome accession   NZ_CP130445
Coordinates   1603184..1604083 (+) Length   299 a.a.
NCBI ID   WP_060386937.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1598184..1609083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS08095 (Q3O83_08095) - 1598875..1600578 (+) 1704 WP_060386936.1 hypothetical protein -
  Q3O83_RS08100 (Q3O83_08100) - 1600575..1600856 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  Q3O83_RS08105 (Q3O83_08105) sucC 1601031..1602188 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  Q3O83_RS08110 (Q3O83_08110) sucD 1602217..1603119 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  Q3O83_RS08115 (Q3O83_08115) dprA 1603184..1604083 (+) 900 WP_060386937.1 DNA-processing protein DprA Machinery gene
  Q3O83_RS08120 (Q3O83_08120) topA 1604265..1606340 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  Q3O83_RS08125 (Q3O83_08125) trmFO 1606405..1607712 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q3O83_RS08130 (Q3O83_08130) xerC 1607782..1608699 (+) 918 WP_043867088.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32793.85 Da        Isoelectric Point: 7.5073

>NTDB_id=858204 Q3O83_RS08115 WP_060386937.1 1603184..1604083(+) (dprA) [Bacillus amyloliquefaciens strain C6.7]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGTEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=858204 Q3O83_RS08115 WP_060386937.1 1603184..1604083(+) (dprA) [Bacillus amyloliquefaciens strain C6.7]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAACAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

40.909

88.294

0.361